Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3739 and EX28DRAFT_3740 are separated by 49 nucleotides EX28DRAFT_3740 and EX28DRAFT_3741 overlap by 1 nucleotides EX28DRAFT_3741 and EX28DRAFT_3742 overlap by 4 nucleotides
EX28DRAFT_3739: EX28DRAFT_3739 - TonB-dependent siderophore receptor, at 416,271 to 418,520
_3739
EX28DRAFT_3740: EX28DRAFT_3740 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 418,570 to 419,367
_3740
EX28DRAFT_3741: EX28DRAFT_3741 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 419,367 to 420,257
_3741
EX28DRAFT_3742: EX28DRAFT_3742 - ABC-type Fe3+-siderophore transport system, permease component, at 420,254 to 422,236
_3742
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.438 kb on - strand at 418.461 kb on + strand at 418.518 kb on + strand at 418.518 kb on + strand at 418.518 kb on + strand at 418.519 kb on - strand at 418.557 kb on + strand at 418.558 kb on - strand at 418.835 kb on - strand, within EX28DRAFT_3740 at 419.218 kb on + strand, within EX28DRAFT_3740 at 419.298 kb on + strand at 419.298 kb on + strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.561 kb on + strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 420.190 kb on - strand at 420.248 kb on + strand at 420.248 kb on + strand at 420.249 kb on - strand at 420.249 kb on - strand at 420.259 kb on + strand at 420.291 kb on + strand at 420.318 kb on + strand at 420.319 kb on - strand at 420.398 kb on - strand at 420.501 kb on + strand, within EX28DRAFT_3742 at 420.505 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.566 kb on - strand, within EX28DRAFT_3742 at 420.734 kb on - strand, within EX28DRAFT_3742 at 420.826 kb on - strand, within EX28DRAFT_3742 at 420.978 kb on + strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 418,438 - +0.1 418,461 + +0.4 418,518 + -0.1 418,518 + -0.2 418,518 + +2.3 418,519 - -0.3 418,557 + +0.8 418,558 - -0.9 418,835 - EX28DRAFT_3740 0.33 -0.2 419,218 + EX28DRAFT_3740 0.81 +0.5 419,298 + -1.3 419,298 + +1.2 419,299 - -1.9 419,299 - +1.7 419,299 - -0.9 419,560 - EX28DRAFT_3741 0.22 -0.6 419,560 - EX28DRAFT_3741 0.22 -0.1 419,560 - EX28DRAFT_3741 0.22 +2.1 419,561 + EX28DRAFT_3741 0.22 +0.2 419,562 - EX28DRAFT_3741 0.22 +0.1 419,562 - EX28DRAFT_3741 0.22 +1.3 420,190 - -0.0 420,248 + +0.7 420,248 + +0.6 420,249 - -0.1 420,249 - -0.7 420,259 + -0.0 420,291 + -0.2 420,318 + +1.3 420,319 - -0.3 420,398 - -0.0 420,501 + EX28DRAFT_3742 0.12 -0.1 420,505 + EX28DRAFT_3742 0.13 +0.7 420,565 + EX28DRAFT_3742 0.16 -0.2 420,565 + EX28DRAFT_3742 0.16 -0.1 420,565 + EX28DRAFT_3742 0.16 -0.4 420,566 - EX28DRAFT_3742 0.16 +0.1 420,734 - EX28DRAFT_3742 0.24 +0.1 420,826 - EX28DRAFT_3742 0.29 -0.6 420,978 + EX28DRAFT_3742 0.37 -1.0 420,979 - EX28DRAFT_3742 0.37 -0.2 420,979 - EX28DRAFT_3742 0.37 -0.3 420,979 - EX28DRAFT_3742 0.37 -1.1 420,979 - EX28DRAFT_3742 0.37 +1.5
Or see this region's nucleotide sequence