Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3666 and EX28DRAFT_3667 are separated by 162 nucleotides EX28DRAFT_3667 and EX28DRAFT_3668 are separated by 10 nucleotides
EX28DRAFT_3666: EX28DRAFT_3666 - cation diffusion facilitator family transporter, at 332,723 to 333,613
_3666
EX28DRAFT_3667: EX28DRAFT_3667 - 3-isopropylmalate dehydratase, small subunit, at 333,776 to 334,381
_3667
EX28DRAFT_3668: EX28DRAFT_3668 - 3-isopropylmalate dehydratase, large subunit, at 334,392 to 335,792
_3668
Position (kb) 333
334
335 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 332.783 kb on - strand at 332.825 kb on + strand, within EX28DRAFT_3666 at 332.826 kb on - strand, within EX28DRAFT_3666 at 333.027 kb on - strand, within EX28DRAFT_3666 at 333.167 kb on - strand, within EX28DRAFT_3666 at 333.189 kb on + strand, within EX28DRAFT_3666 at 333.190 kb on - strand, within EX28DRAFT_3666 at 333.190 kb on - strand, within EX28DRAFT_3666 at 333.284 kb on - strand, within EX28DRAFT_3666 at 333.284 kb on - strand, within EX28DRAFT_3666 at 333.338 kb on - strand, within EX28DRAFT_3666 at 333.413 kb on - strand, within EX28DRAFT_3666 at 333.444 kb on - strand, within EX28DRAFT_3666 at 333.498 kb on - strand, within EX28DRAFT_3666 at 333.536 kb on + strand at 333.558 kb on + strand at 333.558 kb on + strand at 333.558 kb on + strand at 333.559 kb on - strand at 333.563 kb on - strand at 333.566 kb on + strand at 333.675 kb on + strand at 333.675 kb on + strand at 333.710 kb on + strand at 333.711 kb on - strand at 333.714 kb on + strand at 333.715 kb on - strand at 333.903 kb on + strand, within EX28DRAFT_3667 at 334.095 kb on + strand, within EX28DRAFT_3667 at 334.306 kb on + strand, within EX28DRAFT_3667 at 334.307 kb on - strand, within EX28DRAFT_3667 at 334.309 kb on + strand, within EX28DRAFT_3667 at 334.357 kb on + strand at 334.357 kb on + strand at 334.357 kb on + strand at 334.393 kb on + strand at 334.394 kb on - strand at 334.503 kb on - strand at 334.666 kb on - strand, within EX28DRAFT_3668 at 334.666 kb on - strand, within EX28DRAFT_3668 at 334.772 kb on + strand, within EX28DRAFT_3668 at 334.772 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 335.068 kb on + strand, within EX28DRAFT_3668 at 335.068 kb on + strand, within EX28DRAFT_3668 at 335.130 kb on - strand, within EX28DRAFT_3668
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 332,783 - +0.2 332,825 + EX28DRAFT_3666 0.11 +0.6 332,826 - EX28DRAFT_3666 0.12 +0.3 333,027 - EX28DRAFT_3666 0.34 -0.3 333,167 - EX28DRAFT_3666 0.50 +0.1 333,189 + EX28DRAFT_3666 0.52 -0.0 333,190 - EX28DRAFT_3666 0.52 -0.3 333,190 - EX28DRAFT_3666 0.52 +1.4 333,284 - EX28DRAFT_3666 0.63 +0.1 333,284 - EX28DRAFT_3666 0.63 +0.4 333,338 - EX28DRAFT_3666 0.69 +0.1 333,413 - EX28DRAFT_3666 0.77 +0.1 333,444 - EX28DRAFT_3666 0.81 -0.3 333,498 - EX28DRAFT_3666 0.87 +0.3 333,536 + +0.6 333,558 + +0.2 333,558 + -0.7 333,558 + +0.5 333,559 - -0.9 333,563 - +1.2 333,566 + -0.5 333,675 + +0.1 333,675 + +0.1 333,710 + -0.6 333,711 - -0.9 333,714 + -1.4 333,715 - +0.2 333,903 + EX28DRAFT_3667 0.21 -5.4 334,095 + EX28DRAFT_3667 0.53 -4.7 334,306 + EX28DRAFT_3667 0.87 -3.8 334,307 - EX28DRAFT_3667 0.88 -2.8 334,309 + EX28DRAFT_3667 0.88 -1.5 334,357 + -3.1 334,357 + -2.7 334,357 + -3.7 334,393 + -1.6 334,394 - -0.0 334,503 - -1.8 334,666 - EX28DRAFT_3668 0.20 -3.5 334,666 - EX28DRAFT_3668 0.20 -0.3 334,772 + EX28DRAFT_3668 0.27 -2.7 334,772 + EX28DRAFT_3668 0.27 -3.9 334,819 + EX28DRAFT_3668 0.30 -3.2 334,819 + EX28DRAFT_3668 0.30 -1.9 334,819 + EX28DRAFT_3668 0.30 -3.1 334,819 + EX28DRAFT_3668 0.30 -1.7 334,819 + EX28DRAFT_3668 0.30 -4.8 334,819 + EX28DRAFT_3668 0.30 -4.1 334,819 + EX28DRAFT_3668 0.30 -3.0 335,068 + EX28DRAFT_3668 0.48 -2.6 335,068 + EX28DRAFT_3668 0.48 -4.5 335,130 - EX28DRAFT_3668 0.53 -0.7
Or see this region's nucleotide sequence