Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3590 and EX28DRAFT_3591 are separated by 109 nucleotides EX28DRAFT_3591 and EX28DRAFT_3592 are separated by 52 nucleotides
EX28DRAFT_3590: EX28DRAFT_3590 - deoxyribose-phosphate aldolase, at 247,302 to 248,081
_3590
EX28DRAFT_3591: EX28DRAFT_3591 - thymidine phosphorylase (EC 2.4.2.4), at 248,191 to 249,513
_3591
EX28DRAFT_3592: EX28DRAFT_3592 - phosphopentomutase, at 249,566 to 250,789
_3592
Position (kb) 248
249
250 Strain fitness (log2 ratio) -1
0
1
2 at 247.249 kb on + strand at 247.275 kb on + strand at 247.301 kb on + strand at 247.313 kb on - strand at 247.373 kb on + strand at 247.374 kb on - strand at 247.443 kb on - strand, within EX28DRAFT_3590 at 247.443 kb on - strand, within EX28DRAFT_3590 at 247.519 kb on + strand, within EX28DRAFT_3590 at 247.523 kb on + strand, within EX28DRAFT_3590 at 247.523 kb on + strand, within EX28DRAFT_3590 at 247.524 kb on - strand, within EX28DRAFT_3590 at 247.677 kb on - strand, within EX28DRAFT_3590 at 247.758 kb on - strand, within EX28DRAFT_3590 at 247.999 kb on - strand, within EX28DRAFT_3590 at 248.060 kb on + strand at 248.077 kb on - strand at 248.211 kb on + strand at 248.241 kb on - strand at 248.340 kb on + strand, within EX28DRAFT_3591 at 248.340 kb on + strand, within EX28DRAFT_3591 at 248.340 kb on + strand, within EX28DRAFT_3591 at 248.341 kb on - strand, within EX28DRAFT_3591 at 248.625 kb on + strand, within EX28DRAFT_3591 at 248.692 kb on + strand, within EX28DRAFT_3591 at 248.831 kb on - strand, within EX28DRAFT_3591 at 248.970 kb on - strand, within EX28DRAFT_3591 at 249.041 kb on + strand, within EX28DRAFT_3591 at 249.041 kb on + strand, within EX28DRAFT_3591 at 249.042 kb on - strand, within EX28DRAFT_3591 at 249.042 kb on - strand, within EX28DRAFT_3591 at 249.187 kb on + strand, within EX28DRAFT_3591 at 249.187 kb on + strand, within EX28DRAFT_3591 at 249.325 kb on + strand, within EX28DRAFT_3591 at 249.326 kb on - strand, within EX28DRAFT_3591 at 249.511 kb on + strand at 249.517 kb on + strand at 249.519 kb on + strand at 249.520 kb on - strand at 249.565 kb on + strand at 249.580 kb on + strand at 249.580 kb on + strand at 249.581 kb on - strand at 249.911 kb on + strand, within EX28DRAFT_3592 at 249.912 kb on - strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.356 kb on - strand, within EX28DRAFT_3592 at 250.356 kb on - strand, within EX28DRAFT_3592
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 247,249 + -0.1 247,275 + -1.2 247,301 + -1.1 247,313 - -0.0 247,373 + +0.4 247,374 - +0.1 247,443 - EX28DRAFT_3590 0.18 +0.5 247,443 - EX28DRAFT_3590 0.18 +0.6 247,519 + EX28DRAFT_3590 0.28 +1.9 247,523 + EX28DRAFT_3590 0.28 +0.1 247,523 + EX28DRAFT_3590 0.28 -0.0 247,524 - EX28DRAFT_3590 0.28 -1.3 247,677 - EX28DRAFT_3590 0.48 -0.5 247,758 - EX28DRAFT_3590 0.58 -0.2 247,999 - EX28DRAFT_3590 0.89 +0.5 248,060 + -0.0 248,077 - +0.9 248,211 + +0.3 248,241 - +0.3 248,340 + EX28DRAFT_3591 0.11 -1.3 248,340 + EX28DRAFT_3591 0.11 -0.2 248,340 + EX28DRAFT_3591 0.11 +1.3 248,341 - EX28DRAFT_3591 0.11 +0.5 248,625 + EX28DRAFT_3591 0.33 -0.4 248,692 + EX28DRAFT_3591 0.38 +0.3 248,831 - EX28DRAFT_3591 0.48 +0.3 248,970 - EX28DRAFT_3591 0.59 +0.3 249,041 + EX28DRAFT_3591 0.64 -0.0 249,041 + EX28DRAFT_3591 0.64 +0.5 249,042 - EX28DRAFT_3591 0.64 +0.3 249,042 - EX28DRAFT_3591 0.64 +0.5 249,187 + EX28DRAFT_3591 0.75 -0.2 249,187 + EX28DRAFT_3591 0.75 +0.6 249,325 + EX28DRAFT_3591 0.86 +0.3 249,326 - EX28DRAFT_3591 0.86 -0.1 249,511 + +0.3 249,517 + -0.2 249,519 + -0.5 249,520 - -0.4 249,565 + -0.1 249,580 + +0.3 249,580 + +0.1 249,581 - +1.0 249,911 + EX28DRAFT_3592 0.28 -0.0 249,912 - EX28DRAFT_3592 0.28 +0.3 250,355 + EX28DRAFT_3592 0.64 -0.0 250,355 + EX28DRAFT_3592 0.64 +0.7 250,355 + EX28DRAFT_3592 0.64 +0.5 250,355 + EX28DRAFT_3592 0.64 -0.4 250,355 + EX28DRAFT_3592 0.64 -0.4 250,356 - EX28DRAFT_3592 0.65 -0.2 250,356 - EX28DRAFT_3592 0.65 -0.9
Or see this region's nucleotide sequence