Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3589 and EX28DRAFT_3590 are separated by 262 nucleotides EX28DRAFT_3590 and EX28DRAFT_3591 are separated by 109 nucleotides
EX28DRAFT_3589: EX28DRAFT_3589 - glycine radical enzyme, YjjI family, at 245,492 to 247,039
_3589
EX28DRAFT_3590: EX28DRAFT_3590 - deoxyribose-phosphate aldolase, at 247,302 to 248,081
_3590
EX28DRAFT_3591: EX28DRAFT_3591 - thymidine phosphorylase (EC 2.4.2.4), at 248,191 to 249,513
_3591
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.417 kb on - strand, within EX28DRAFT_3589 at 246.468 kb on + strand, within EX28DRAFT_3589 at 246.662 kb on + strand, within EX28DRAFT_3589 at 246.665 kb on + strand, within EX28DRAFT_3589 at 246.666 kb on - strand, within EX28DRAFT_3589 at 246.687 kb on + strand, within EX28DRAFT_3589 at 246.688 kb on - strand, within EX28DRAFT_3589 at 246.828 kb on + strand, within EX28DRAFT_3589 at 246.872 kb on - strand, within EX28DRAFT_3589 at 246.975 kb on - strand at 247.039 kb on + strand at 247.039 kb on + strand at 247.040 kb on - strand at 247.080 kb on + strand at 247.131 kb on + strand at 247.249 kb on + strand at 247.275 kb on + strand at 247.301 kb on + strand at 247.313 kb on - strand at 247.373 kb on + strand at 247.374 kb on - strand at 247.443 kb on - strand, within EX28DRAFT_3590 at 247.443 kb on - strand, within EX28DRAFT_3590 at 247.519 kb on + strand, within EX28DRAFT_3590 at 247.523 kb on + strand, within EX28DRAFT_3590 at 247.523 kb on + strand, within EX28DRAFT_3590 at 247.524 kb on - strand, within EX28DRAFT_3590 at 247.677 kb on - strand, within EX28DRAFT_3590 at 247.758 kb on - strand, within EX28DRAFT_3590 at 247.999 kb on - strand, within EX28DRAFT_3590 at 248.060 kb on + strand at 248.077 kb on - strand at 248.211 kb on + strand at 248.241 kb on - strand at 248.340 kb on + strand, within EX28DRAFT_3591 at 248.340 kb on + strand, within EX28DRAFT_3591 at 248.340 kb on + strand, within EX28DRAFT_3591 at 248.341 kb on - strand, within EX28DRAFT_3591 at 248.625 kb on + strand, within EX28DRAFT_3591 at 248.692 kb on + strand, within EX28DRAFT_3591 at 248.831 kb on - strand, within EX28DRAFT_3591 at 248.970 kb on - strand, within EX28DRAFT_3591 at 249.041 kb on + strand, within EX28DRAFT_3591 at 249.041 kb on + strand, within EX28DRAFT_3591 at 249.042 kb on - strand, within EX28DRAFT_3591 at 249.042 kb on - strand, within EX28DRAFT_3591
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 246,417 - EX28DRAFT_3589 0.60 -0.2 246,468 + EX28DRAFT_3589 0.63 -0.4 246,662 + EX28DRAFT_3589 0.76 -0.6 246,665 + EX28DRAFT_3589 0.76 +0.7 246,666 - EX28DRAFT_3589 0.76 +0.0 246,687 + EX28DRAFT_3589 0.77 +0.1 246,688 - EX28DRAFT_3589 0.77 +0.1 246,828 + EX28DRAFT_3589 0.86 -0.7 246,872 - EX28DRAFT_3589 0.89 +0.5 246,975 - -0.2 247,039 + +0.9 247,039 + -0.2 247,040 - +0.2 247,080 + -1.0 247,131 + -2.5 247,249 + -0.1 247,275 + -1.2 247,301 + -1.1 247,313 - -0.0 247,373 + +0.4 247,374 - +0.1 247,443 - EX28DRAFT_3590 0.18 +0.5 247,443 - EX28DRAFT_3590 0.18 +0.6 247,519 + EX28DRAFT_3590 0.28 +1.9 247,523 + EX28DRAFT_3590 0.28 +0.1 247,523 + EX28DRAFT_3590 0.28 -0.0 247,524 - EX28DRAFT_3590 0.28 -1.3 247,677 - EX28DRAFT_3590 0.48 -0.5 247,758 - EX28DRAFT_3590 0.58 -0.2 247,999 - EX28DRAFT_3590 0.89 +0.5 248,060 + -0.0 248,077 - +0.9 248,211 + +0.3 248,241 - +0.3 248,340 + EX28DRAFT_3591 0.11 -1.3 248,340 + EX28DRAFT_3591 0.11 -0.2 248,340 + EX28DRAFT_3591 0.11 +1.3 248,341 - EX28DRAFT_3591 0.11 +0.5 248,625 + EX28DRAFT_3591 0.33 -0.4 248,692 + EX28DRAFT_3591 0.38 +0.3 248,831 - EX28DRAFT_3591 0.48 +0.3 248,970 - EX28DRAFT_3591 0.59 +0.3 249,041 + EX28DRAFT_3591 0.64 -0.0 249,041 + EX28DRAFT_3591 0.64 +0.5 249,042 - EX28DRAFT_3591 0.64 +0.3 249,042 - EX28DRAFT_3591 0.64 +0.5
Or see this region's nucleotide sequence