Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3539 and EX28DRAFT_3540 are separated by 182 nucleotides EX28DRAFT_3540 and EX28DRAFT_3541 overlap by 29 nucleotides
EX28DRAFT_3539: EX28DRAFT_3539 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 202,589 to 204,151
_3539
EX28DRAFT_3540: EX28DRAFT_3540 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 204,334 to 205,266
_3540
EX28DRAFT_3541: EX28DRAFT_3541 - 4-hydroxyphenylacetate permease, at 205,238 to 206,590
_3541
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 203.544 kb on + strand, within EX28DRAFT_3539 at 203.628 kb on + strand, within EX28DRAFT_3539 at 203.732 kb on - strand, within EX28DRAFT_3539 at 203.757 kb on + strand, within EX28DRAFT_3539 at 203.985 kb on + strand, within EX28DRAFT_3539 at 204.057 kb on + strand at 204.057 kb on + strand at 204.061 kb on + strand at 204.061 kb on + strand at 204.063 kb on + strand at 204.063 kb on + strand at 204.063 kb on + strand at 204.063 kb on + strand at 204.064 kb on - strand at 204.064 kb on - strand at 204.064 kb on - strand at 204.064 kb on - strand at 204.064 kb on - strand at 204.092 kb on + strand at 204.151 kb on + strand at 204.793 kb on - strand, within EX28DRAFT_3540 at 204.933 kb on - strand, within EX28DRAFT_3540 at 205.237 kb on - strand at 205.363 kb on + strand at 205.363 kb on + strand at 205.364 kb on - strand at 205.503 kb on - strand, within EX28DRAFT_3541 at 205.809 kb on + strand, within EX28DRAFT_3541 at 206.129 kb on - strand, within EX28DRAFT_3541
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 203,544 + EX28DRAFT_3539 0.61 +0.5 203,628 + EX28DRAFT_3539 0.66 -0.7 203,732 - EX28DRAFT_3539 0.73 +0.5 203,757 + EX28DRAFT_3539 0.75 -0.5 203,985 + EX28DRAFT_3539 0.89 -0.3 204,057 + -0.1 204,057 + +1.3 204,061 + -0.1 204,061 + +0.3 204,063 + +1.0 204,063 + -0.4 204,063 + +0.3 204,063 + -0.2 204,064 - +0.5 204,064 - -0.1 204,064 - -0.3 204,064 - +0.5 204,064 - +0.5 204,092 + +0.2 204,151 + -0.3 204,793 - EX28DRAFT_3540 0.49 -1.1 204,933 - EX28DRAFT_3540 0.64 -0.3 205,237 - -0.5 205,363 + -0.0 205,363 + -2.2 205,364 - -0.8 205,503 - EX28DRAFT_3541 0.20 +3.0 205,809 + EX28DRAFT_3541 0.42 -0.6 206,129 - EX28DRAFT_3541 0.66 +0.2
Or see this region's nucleotide sequence