Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3501

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3499 and EX28DRAFT_3500 overlap by 4 nucleotidesEX28DRAFT_3500 and EX28DRAFT_3501 overlap by 1 nucleotidesEX28DRAFT_3501 and EX28DRAFT_3502 are separated by 218 nucleotidesEX28DRAFT_3502 and EX28DRAFT_3503 are separated by 61 nucleotides EX28DRAFT_3499: EX28DRAFT_3499 - Arabinose efflux permease, at 161,966 to 163,585 _3499 EX28DRAFT_3500: EX28DRAFT_3500 - Predicted membrane protein, at 163,582 to 163,989 _3500 EX28DRAFT_3501: EX28DRAFT_3501 - Predicted metal-dependent hydrolase with the TIM-barrel fold, at 163,989 to 165,860 _3501 EX28DRAFT_3502: EX28DRAFT_3502 - Amidases related to nicotinamidase, at 166,079 to 166,765 _3502 EX28DRAFT_3503: EX28DRAFT_3503 - XapX domain, at 166,827 to 167,048 _3503 Position (kb) 163 164 165 166Strain fitness (log2 ratio) -1 0 1 2at 163.299 kb on + strand, within EX28DRAFT_3499at 163.300 kb on - strand, within EX28DRAFT_3499at 163.300 kb on - strand, within EX28DRAFT_3499at 163.303 kb on + strand, within EX28DRAFT_3499at 163.303 kb on + strand, within EX28DRAFT_3499at 163.303 kb on + strand, within EX28DRAFT_3499at 163.304 kb on - strand, within EX28DRAFT_3499at 163.304 kb on - strand, within EX28DRAFT_3499at 163.366 kb on + strand, within EX28DRAFT_3499at 163.767 kb on - strand, within EX28DRAFT_3500at 163.767 kb on - strand, within EX28DRAFT_3500at 163.910 kb on + strand, within EX28DRAFT_3500at 163.910 kb on + strand, within EX28DRAFT_3500at 163.911 kb on - strand, within EX28DRAFT_3500at 164.320 kb on + strand, within EX28DRAFT_3501at 164.321 kb on - strand, within EX28DRAFT_3501at 164.363 kb on + strand, within EX28DRAFT_3501at 164.363 kb on + strand, within EX28DRAFT_3501at 164.461 kb on + strand, within EX28DRAFT_3501at 164.461 kb on + strand, within EX28DRAFT_3501at 164.462 kb on - strand, within EX28DRAFT_3501at 164.524 kb on + strand, within EX28DRAFT_3501at 164.638 kb on + strand, within EX28DRAFT_3501at 164.639 kb on - strand, within EX28DRAFT_3501at 164.764 kb on - strand, within EX28DRAFT_3501at 164.764 kb on - strand, within EX28DRAFT_3501at 165.060 kb on - strand, within EX28DRAFT_3501at 165.124 kb on + strand, within EX28DRAFT_3501at 165.412 kb on + strand, within EX28DRAFT_3501at 165.619 kb on + strand, within EX28DRAFT_3501at 165.620 kb on - strand, within EX28DRAFT_3501at 165.861 kb on - strandat 165.926 kb on + strandat 165.928 kb on + strandat 165.928 kb on + strandat 165.929 kb on - strandat 165.929 kb on - strandat 165.929 kb on - strandat 165.933 kb on + strandat 165.933 kb on + strandat 165.943 kb on - strandat 165.943 kb on - strandat 165.944 kb on + strandat 165.952 kb on + strandat 165.953 kb on - strandat 165.953 kb on - strandat 165.954 kb on + strandat 165.955 kb on - strandat 165.955 kb on - strandat 165.958 kb on + strandat 165.959 kb on - strandat 165.959 kb on - strandat 165.959 kb on - strandat 165.959 kb on - strandat 165.959 kb on - strandat 165.960 kb on + strandat 165.961 kb on - strandat 165.961 kb on - strandat 165.965 kb on - strandat 165.974 kb on + strandat 165.975 kb on - strandat 165.975 kb on - strandat 165.975 kb on - strandat 165.986 kb on + strandat 165.987 kb on - strandat 165.990 kb on + strandat 166.078 kb on + strandat 166.079 kb on - strandat 166.171 kb on + strand, within EX28DRAFT_3502at 166.172 kb on - strand, within EX28DRAFT_3502at 166.286 kb on + strand, within EX28DRAFT_3502at 166.333 kb on + strand, within EX28DRAFT_3502at 166.334 kb on - strand, within EX28DRAFT_3502at 166.472 kb on + strand, within EX28DRAFT_3502at 166.482 kb on - strand, within EX28DRAFT_3502at 166.482 kb on - strand, within EX28DRAFT_3502at 166.483 kb on + strand, within EX28DRAFT_3502at 166.484 kb on - strand, within EX28DRAFT_3502at 166.625 kb on + strand, within EX28DRAFT_3502at 166.686 kb on - strand, within EX28DRAFT_3502at 166.686 kb on - strand, within EX28DRAFT_3502at 166.691 kb on + strand, within EX28DRAFT_3502at 166.691 kb on + strand, within EX28DRAFT_3502

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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163,299 + EX28DRAFT_3499 0.82 +0.0
163,300 - EX28DRAFT_3499 0.82 +0.2
163,300 - EX28DRAFT_3499 0.82 -0.2
163,303 + EX28DRAFT_3499 0.83 +0.1
163,303 + EX28DRAFT_3499 0.83 -0.9
163,303 + EX28DRAFT_3499 0.83 -0.0
163,304 - EX28DRAFT_3499 0.83 +0.2
163,304 - EX28DRAFT_3499 0.83 +0.1
163,366 + EX28DRAFT_3499 0.86 -0.2
163,767 - EX28DRAFT_3500 0.45 -0.0
163,767 - EX28DRAFT_3500 0.45 +0.0
163,910 + EX28DRAFT_3500 0.80 +0.1
163,910 + EX28DRAFT_3500 0.80 +0.0
163,911 - EX28DRAFT_3500 0.81 -0.2
164,320 + EX28DRAFT_3501 0.18 -1.3
164,321 - EX28DRAFT_3501 0.18 -0.2
164,363 + EX28DRAFT_3501 0.20 +0.2
164,363 + EX28DRAFT_3501 0.20 +0.1
164,461 + EX28DRAFT_3501 0.25 +0.2
164,461 + EX28DRAFT_3501 0.25 -1.1
164,462 - EX28DRAFT_3501 0.25 -1.1
164,524 + EX28DRAFT_3501 0.29 -0.0
164,638 + EX28DRAFT_3501 0.35 -0.4
164,639 - EX28DRAFT_3501 0.35 -0.1
164,764 - EX28DRAFT_3501 0.41 -0.2
164,764 - EX28DRAFT_3501 0.41 -0.1
165,060 - EX28DRAFT_3501 0.57 +0.2
165,124 + EX28DRAFT_3501 0.61 -0.1
165,412 + EX28DRAFT_3501 0.76 +2.1
165,619 + EX28DRAFT_3501 0.87 -0.4
165,620 - EX28DRAFT_3501 0.87 -0.1
165,861 - +0.0
165,926 + -0.0
165,928 + +0.5
165,928 + -0.1
165,929 - -0.4
165,929 - -0.1
165,929 - -0.2
165,933 + -0.6
165,933 + +0.8
165,943 - -0.3
165,943 - +0.0
165,944 + -0.1
165,952 + +0.5
165,953 - -0.3
165,953 - +0.5
165,954 + +0.6
165,955 - -0.5
165,955 - +0.2
165,958 + -0.3
165,959 - +0.1
165,959 - -0.6
165,959 - -0.7
165,959 - -0.5
165,959 - +0.0
165,960 + +0.1
165,961 - +0.1
165,961 - -0.1
165,965 - -0.6
165,974 + +0.0
165,975 - +0.3
165,975 - -0.5
165,975 - +0.7
165,986 + +0.1
165,987 - -0.0
165,990 + +0.1
166,078 + -0.0
166,079 - +0.5
166,171 + EX28DRAFT_3502 0.13 -1.0
166,172 - EX28DRAFT_3502 0.14 +0.1
166,286 + EX28DRAFT_3502 0.30 +0.8
166,333 + EX28DRAFT_3502 0.37 +0.8
166,334 - EX28DRAFT_3502 0.37 +1.3
166,472 + EX28DRAFT_3502 0.57 +0.0
166,482 - EX28DRAFT_3502 0.59 +0.1
166,482 - EX28DRAFT_3502 0.59 +0.2
166,483 + EX28DRAFT_3502 0.59 +0.2
166,484 - EX28DRAFT_3502 0.59 +0.1
166,625 + EX28DRAFT_3502 0.79 -0.2
166,686 - EX28DRAFT_3502 0.88 -0.1
166,686 - EX28DRAFT_3502 0.88 +0.8
166,691 + EX28DRAFT_3502 0.89 -0.1
166,691 + EX28DRAFT_3502 0.89 +0.6

Or see this region's nucleotide sequence