Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3407 and EX28DRAFT_3408 are separated by 2 nucleotides EX28DRAFT_3408 and EX28DRAFT_3409 are separated by 44 nucleotides EX28DRAFT_3409 and EX28DRAFT_3410 overlap by 53 nucleotides EX28DRAFT_3410 and EX28DRAFT_3411 overlap by 4 nucleotides
EX28DRAFT_3407: EX28DRAFT_3407 - Uncharacterized protein conserved in bacteria, at 77,039 to 80,815
_3407
EX28DRAFT_3408: EX28DRAFT_3408 - Uncharacterized conserved protein, at 80,818 to 81,162
_3408
EX28DRAFT_3409: EX28DRAFT_3409 - hypothetical protein, at 81,207 to 81,530
_3409
EX28DRAFT_3410: EX28DRAFT_3410 - hypothetical protein, at 81,478 to 81,948
_3410
EX28DRAFT_3411: EX28DRAFT_3411 - hypothetical protein, at 81,945 to 82,529
_3411
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.059 kb on + strand, within EX28DRAFT_3407 at 80.083 kb on + strand, within EX28DRAFT_3407 at 80.116 kb on + strand, within EX28DRAFT_3407 at 80.116 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.210 kb on - strand, within EX28DRAFT_3407 at 80.242 kb on + strand, within EX28DRAFT_3407 at 80.471 kb on + strand at 80.598 kb on + strand at 80.660 kb on + strand at 80.660 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.665 kb on - strand at 80.665 kb on - strand at 80.682 kb on + strand at 80.687 kb on + strand at 80.688 kb on - strand at 80.688 kb on - strand at 80.728 kb on - strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.752 kb on - strand at 80.752 kb on - strand at 80.753 kb on + strand at 80.753 kb on + strand at 80.775 kb on + strand at 80.799 kb on - strand at 80.799 kb on - strand at 80.814 kb on - strand at 80.899 kb on + strand, within EX28DRAFT_3408 at 81.089 kb on - strand, within EX28DRAFT_3408 at 81.094 kb on + strand, within EX28DRAFT_3408 at 81.095 kb on - strand, within EX28DRAFT_3408 at 81.135 kb on + strand at 81.266 kb on - strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.329 kb on + strand, within EX28DRAFT_3409 at 81.380 kb on - strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.407 kb on - strand, within EX28DRAFT_3409 at 81.505 kb on - strand at 81.532 kb on + strand, within EX28DRAFT_3410 at 81.533 kb on - strand, within EX28DRAFT_3410 at 82.095 kb on - strand, within EX28DRAFT_3411 at 82.141 kb on + strand, within EX28DRAFT_3411
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 80,059 + EX28DRAFT_3407 0.80 -1.0 80,083 + EX28DRAFT_3407 0.81 -3.1 80,116 + EX28DRAFT_3407 0.81 -0.2 80,116 + EX28DRAFT_3407 0.81 +0.4 80,119 + EX28DRAFT_3407 0.82 -0.6 80,119 + EX28DRAFT_3407 0.82 -0.4 80,119 + EX28DRAFT_3407 0.82 -0.2 80,119 + EX28DRAFT_3407 0.82 +0.2 80,120 - EX28DRAFT_3407 0.82 -0.8 80,120 - EX28DRAFT_3407 0.82 -0.2 80,120 - EX28DRAFT_3407 0.82 -0.3 80,120 - EX28DRAFT_3407 0.82 -1.5 80,210 - EX28DRAFT_3407 0.84 +0.1 80,242 + EX28DRAFT_3407 0.85 -0.2 80,471 + -0.1 80,598 + -0.5 80,660 + -0.1 80,660 + -0.9 80,664 + -0.4 80,664 + -1.2 80,664 + -0.2 80,664 + -0.4 80,664 + -0.2 80,664 + -0.2 80,664 + -1.3 80,665 - -1.9 80,665 - -0.7 80,682 + -0.7 80,687 + +0.9 80,688 - -1.4 80,688 - -0.5 80,728 - -2.8 80,751 + -0.9 80,751 + +0.2 80,751 + +0.6 80,751 + -0.8 80,751 + -0.6 80,751 + -0.9 80,751 + +0.4 80,752 - -0.4 80,752 - -1.5 80,753 + -1.7 80,753 + -0.4 80,775 + -0.3 80,799 - -1.3 80,799 - -1.0 80,814 - -0.6 80,899 + EX28DRAFT_3408 0.23 +0.2 81,089 - EX28DRAFT_3408 0.79 -0.4 81,094 + EX28DRAFT_3408 0.80 -1.0 81,095 - EX28DRAFT_3408 0.80 -0.8 81,135 + -0.6 81,266 - EX28DRAFT_3409 0.18 +0.4 81,318 + EX28DRAFT_3409 0.34 -0.2 81,318 + EX28DRAFT_3409 0.34 -0.5 81,329 + EX28DRAFT_3409 0.38 +0.0 81,380 - EX28DRAFT_3409 0.53 -0.2 81,402 + EX28DRAFT_3409 0.60 -0.1 81,402 + EX28DRAFT_3409 0.60 -1.4 81,403 - EX28DRAFT_3409 0.60 -0.2 81,403 - EX28DRAFT_3409 0.60 +0.4 81,406 + EX28DRAFT_3409 0.61 -0.4 81,406 + EX28DRAFT_3409 0.61 +0.1 81,407 - EX28DRAFT_3409 0.62 +0.1 81,505 - -0.4 81,532 + EX28DRAFT_3410 0.11 -1.0 81,533 - EX28DRAFT_3410 0.12 -0.9 82,095 - EX28DRAFT_3411 0.26 +0.3 82,141 + EX28DRAFT_3411 0.34 +0.5
Or see this region's nucleotide sequence