Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3368 and EX28DRAFT_3369 are separated by 85 nucleotides EX28DRAFT_3369 and EX28DRAFT_3370 are separated by 74 nucleotides EX28DRAFT_3370 and EX28DRAFT_3371 are separated by 56 nucleotides
EX28DRAFT_3368: EX28DRAFT_3368 - tRNA dimethylallyltransferase, at 36,553 to 37,503
_3368
EX28DRAFT_3369: EX28DRAFT_3369 - RNA chaperone Hfq, at 37,589 to 37,900
_3369
EX28DRAFT_3370: EX28DRAFT_3370 - GTP-binding protein HflX, at 37,975 to 39,255
_3370
EX28DRAFT_3371: EX28DRAFT_3371 - HflK protein, at 39,312 to 40,571
_3371
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 37.322 kb on - strand, within EX28DRAFT_3368 at 37.342 kb on + strand, within EX28DRAFT_3368 at 37.509 kb on + strand at 37.509 kb on + strand at 37.509 kb on + strand at 37.522 kb on + strand at 37.555 kb on + strand at 37.831 kb on + strand, within EX28DRAFT_3369 at 37.988 kb on - strand at 38.023 kb on + strand at 38.024 kb on - strand at 38.043 kb on + strand at 38.044 kb on - strand at 38.121 kb on + strand, within EX28DRAFT_3370 at 38.122 kb on - strand, within EX28DRAFT_3370 at 38.140 kb on + strand, within EX28DRAFT_3370 at 38.157 kb on + strand, within EX28DRAFT_3370 at 38.297 kb on + strand, within EX28DRAFT_3370 at 38.298 kb on - strand, within EX28DRAFT_3370 at 38.322 kb on + strand, within EX28DRAFT_3370 at 38.689 kb on - strand, within EX28DRAFT_3370 at 38.740 kb on - strand, within EX28DRAFT_3370 at 38.934 kb on + strand, within EX28DRAFT_3370 at 38.935 kb on - strand, within EX28DRAFT_3370 at 39.189 kb on + strand at 39.190 kb on - strand at 39.244 kb on + strand at 39.244 kb on + strand at 39.245 kb on - strand at 39.247 kb on - strand at 39.307 kb on + strand at 39.307 kb on + strand at 39.307 kb on + strand at 39.308 kb on - strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.310 kb on - strand at 39.333 kb on - strand at 39.903 kb on + strand, within EX28DRAFT_3371 at 39.904 kb on - strand, within EX28DRAFT_3371 at 39.988 kb on - strand, within EX28DRAFT_3371 at 39.998 kb on + strand, within EX28DRAFT_3371 at 39.998 kb on + strand, within EX28DRAFT_3371 at 40.098 kb on + strand, within EX28DRAFT_3371 at 40.120 kb on - strand, within EX28DRAFT_3371 at 40.185 kb on + strand, within EX28DRAFT_3371 at 40.188 kb on - strand, within EX28DRAFT_3371 at 40.251 kb on + strand, within EX28DRAFT_3371 at 40.252 kb on - strand, within EX28DRAFT_3371
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 37,322 - EX28DRAFT_3368 0.81 -2.1 37,342 + EX28DRAFT_3368 0.83 -1.6 37,509 + +0.6 37,509 + +0.3 37,509 + +0.3 37,522 + -0.8 37,555 + +0.3 37,831 + EX28DRAFT_3369 0.78 +1.0 37,988 - -0.2 38,023 + -0.5 38,024 - -0.5 38,043 + +0.1 38,044 - -1.7 38,121 + EX28DRAFT_3370 0.11 -0.5 38,122 - EX28DRAFT_3370 0.11 -0.9 38,140 + EX28DRAFT_3370 0.13 -0.3 38,157 + EX28DRAFT_3370 0.14 -0.1 38,297 + EX28DRAFT_3370 0.25 -0.3 38,298 - EX28DRAFT_3370 0.25 -0.7 38,322 + EX28DRAFT_3370 0.27 -0.1 38,689 - EX28DRAFT_3370 0.56 +0.1 38,740 - EX28DRAFT_3370 0.60 -0.2 38,934 + EX28DRAFT_3370 0.75 -1.4 38,935 - EX28DRAFT_3370 0.75 +0.3 39,189 + -0.6 39,190 - -0.1 39,244 + -0.1 39,244 + -1.7 39,245 - +0.3 39,247 - -0.2 39,307 + -0.7 39,307 + +0.6 39,307 + +0.2 39,308 - -0.2 39,309 + +0.1 39,309 + +1.0 39,309 + -0.0 39,309 + -0.4 39,309 + +0.1 39,309 + +0.1 39,309 + +0.1 39,309 + -0.1 39,310 - +0.7 39,333 - -0.5 39,903 + EX28DRAFT_3371 0.47 -0.2 39,904 - EX28DRAFT_3371 0.47 +0.2 39,988 - EX28DRAFT_3371 0.54 +0.2 39,998 + EX28DRAFT_3371 0.54 -0.2 39,998 + EX28DRAFT_3371 0.54 -0.6 40,098 + EX28DRAFT_3371 0.62 +0.7 40,120 - EX28DRAFT_3371 0.64 -0.8 40,185 + EX28DRAFT_3371 0.69 -0.1 40,188 - EX28DRAFT_3371 0.70 +0.3 40,251 + EX28DRAFT_3371 0.75 -0.5 40,252 - EX28DRAFT_3371 0.75 -0.0
Or see this region's nucleotide sequence