Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3281

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3279 and EX28DRAFT_3280 are separated by 15 nucleotidesEX28DRAFT_3280 and EX28DRAFT_3281 are separated by 300 nucleotidesEX28DRAFT_3281 and EX28DRAFT_3282 are separated by 189 nucleotidesEX28DRAFT_3282 and EX28DRAFT_3283 are separated by 171 nucleotides EX28DRAFT_3279: EX28DRAFT_3279 - Ribosomal protein S9, at 577,175 to 577,567 _3279 EX28DRAFT_3280: EX28DRAFT_3280 - LSU ribosomal protein L13P, at 577,583 to 578,011 _3280 EX28DRAFT_3281: EX28DRAFT_3281 - Predicted ATPase, at 578,312 to 579,436 _3281 EX28DRAFT_3282: EX28DRAFT_3282 - Uncharacterized protein conserved in bacteria, at 579,626 to 580,024 _3282 EX28DRAFT_3283: EX28DRAFT_3283 - periplasmic serine protease, Do/DeqQ family, at 580,196 to 581,563 _3283 Position (kb) 578 579 580Strain fitness (log2 ratio) -1 0 1 2 3at 578.209 kb on + strandat 578.279 kb on + strandat 578.313 kb on + strandat 578.320 kb on + strandat 578.321 kb on - strandat 578.321 kb on - strandat 578.337 kb on + strandat 578.337 kb on + strandat 578.338 kb on - strandat 578.338 kb on - strandat 578.338 kb on - strandat 578.418 kb on + strandat 578.419 kb on - strandat 578.420 kb on + strandat 578.420 kb on + strandat 578.420 kb on + strandat 578.421 kb on - strandat 578.421 kb on - strandat 578.421 kb on - strandat 578.421 kb on - strandat 578.421 kb on - strandat 578.421 kb on - strandat 578.463 kb on + strand, within EX28DRAFT_3281at 578.528 kb on + strand, within EX28DRAFT_3281at 578.529 kb on - strand, within EX28DRAFT_3281at 578.574 kb on + strand, within EX28DRAFT_3281at 578.574 kb on + strand, within EX28DRAFT_3281at 578.574 kb on + strand, within EX28DRAFT_3281at 578.603 kb on + strand, within EX28DRAFT_3281at 578.725 kb on + strand, within EX28DRAFT_3281at 578.725 kb on + strand, within EX28DRAFT_3281at 578.948 kb on + strand, within EX28DRAFT_3281at 578.949 kb on - strand, within EX28DRAFT_3281at 579.113 kb on - strand, within EX28DRAFT_3281at 579.113 kb on - strand, within EX28DRAFT_3281at 579.161 kb on - strand, within EX28DRAFT_3281at 579.163 kb on - strand, within EX28DRAFT_3281at 579.211 kb on + strand, within EX28DRAFT_3281at 579.211 kb on + strand, within EX28DRAFT_3281at 579.212 kb on - strand, within EX28DRAFT_3281at 579.212 kb on - strand, within EX28DRAFT_3281at 579.212 kb on - strand, within EX28DRAFT_3281at 579.212 kb on - strand, within EX28DRAFT_3281at 579.213 kb on + strand, within EX28DRAFT_3281at 579.213 kb on + strand, within EX28DRAFT_3281at 579.213 kb on + strand, within EX28DRAFT_3281at 579.213 kb on + strand, within EX28DRAFT_3281at 579.213 kb on + strand, within EX28DRAFT_3281at 579.214 kb on - strand, within EX28DRAFT_3281at 579.214 kb on - strand, within EX28DRAFT_3281at 579.214 kb on - strand, within EX28DRAFT_3281at 579.214 kb on - strand, within EX28DRAFT_3281at 579.214 kb on - strand, within EX28DRAFT_3281at 579.442 kb on + strandat 579.448 kb on + strandat 579.449 kb on - strandat 579.449 kb on - strandat 579.503 kb on + strandat 579.504 kb on - strandat 579.518 kb on + strandat 579.546 kb on - strandat 579.555 kb on - strandat 579.555 kb on - strandat 579.638 kb on + strandat 579.638 kb on + strandat 579.845 kb on + strand, within EX28DRAFT_3282at 579.854 kb on - strand, within EX28DRAFT_3282at 580.098 kb on - strandat 580.105 kb on + strandat 580.106 kb on - strandat 580.106 kb on - strandat 580.135 kb on + strandat 580.170 kb on - strandat 580.170 kb on - strandat 580.234 kb on - strandat 580.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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578,209 + +0.8
578,279 + +0.1
578,313 + +0.0
578,320 + +0.5
578,321 - +0.4
578,321 - -0.3
578,337 + +3.1
578,337 + +2.4
578,338 - +2.5
578,338 - +2.2
578,338 - +2.3
578,418 + +2.1
578,419 - +2.9
578,420 + +2.4
578,420 + +2.4
578,420 + +2.2
578,421 - +2.5
578,421 - +2.6
578,421 - +2.1
578,421 - +3.0
578,421 - +2.3
578,421 - +2.4
578,463 + EX28DRAFT_3281 0.13 +2.3
578,528 + EX28DRAFT_3281 0.19 +2.4
578,529 - EX28DRAFT_3281 0.19 +3.4
578,574 + EX28DRAFT_3281 0.23 +2.4
578,574 + EX28DRAFT_3281 0.23 +2.0
578,574 + EX28DRAFT_3281 0.23 +2.1
578,603 + EX28DRAFT_3281 0.26 +2.6
578,725 + EX28DRAFT_3281 0.37 +2.7
578,725 + EX28DRAFT_3281 0.37 +2.1
578,948 + EX28DRAFT_3281 0.57 +2.3
578,949 - EX28DRAFT_3281 0.57 +2.6
579,113 - EX28DRAFT_3281 0.71 +2.4
579,113 - EX28DRAFT_3281 0.71 +2.6
579,161 - EX28DRAFT_3281 0.75 +3.5
579,163 - EX28DRAFT_3281 0.76 +2.0
579,211 + EX28DRAFT_3281 0.80 +1.8
579,211 + EX28DRAFT_3281 0.80 +2.5
579,212 - EX28DRAFT_3281 0.80 +2.5
579,212 - EX28DRAFT_3281 0.80 +2.2
579,212 - EX28DRAFT_3281 0.80 +2.6
579,212 - EX28DRAFT_3281 0.80 +2.5
579,213 + EX28DRAFT_3281 0.80 +2.4
579,213 + EX28DRAFT_3281 0.80 +2.4
579,213 + EX28DRAFT_3281 0.80 +2.6
579,213 + EX28DRAFT_3281 0.80 +0.6
579,213 + EX28DRAFT_3281 0.80 +2.6
579,214 - EX28DRAFT_3281 0.80 +1.7
579,214 - EX28DRAFT_3281 0.80 +2.6
579,214 - EX28DRAFT_3281 0.80 +2.3
579,214 - EX28DRAFT_3281 0.80 +1.9
579,214 - EX28DRAFT_3281 0.80 +2.6
579,442 + +2.0
579,448 + +0.6
579,449 - +0.1
579,449 - +0.3
579,503 + -0.1
579,504 - +0.3
579,518 + +0.3
579,546 - -1.1
579,555 - -1.1
579,555 - -0.7
579,638 + -1.5
579,638 + -1.0
579,845 + EX28DRAFT_3282 0.55 -0.5
579,854 - EX28DRAFT_3282 0.57 -1.7
580,098 - +0.6
580,105 + -0.3
580,106 - +0.3
580,106 - +0.5
580,135 + +0.1
580,170 - +0.1
580,170 - +1.2
580,234 - +0.3
580,270 - +0.0

Or see this region's nucleotide sequence