Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3276 and EX28DRAFT_3277 are separated by 29 nucleotides EX28DRAFT_3277 and EX28DRAFT_3278 overlap by 1 nucleotides EX28DRAFT_3278 and EX28DRAFT_3279 are separated by 308 nucleotides EX28DRAFT_3279 and EX28DRAFT_3280 are separated by 15 nucleotides
EX28DRAFT_3276: EX28DRAFT_3276 - glutamate synthase small subunit family protein, proteobacterial, at 574,277 to 575,695
_3276
EX28DRAFT_3277: EX28DRAFT_3277 - Stringent starvation protein B, at 575,725 to 576,228
_3277
EX28DRAFT_3278: EX28DRAFT_3278 - Glutathione S-transferase, at 576,228 to 576,866
_3278
EX28DRAFT_3279: EX28DRAFT_3279 - Ribosomal protein S9, at 577,175 to 577,567
_3279
EX28DRAFT_3280: EX28DRAFT_3280 - LSU ribosomal protein L13P, at 577,583 to 578,011
_3280
Position (kb) 576
577 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 575.229 kb on - strand, within EX28DRAFT_3276 at 575.347 kb on + strand, within EX28DRAFT_3276 at 575.681 kb on + strand at 575.820 kb on + strand, within EX28DRAFT_3277 at 575.820 kb on + strand, within EX28DRAFT_3277 at 575.821 kb on - strand, within EX28DRAFT_3277 at 575.894 kb on + strand, within EX28DRAFT_3277 at 575.942 kb on + strand, within EX28DRAFT_3277 at 575.943 kb on - strand, within EX28DRAFT_3277 at 575.943 kb on - strand, within EX28DRAFT_3277 at 575.946 kb on + strand, within EX28DRAFT_3277 at 575.946 kb on + strand, within EX28DRAFT_3277 at 576.170 kb on + strand, within EX28DRAFT_3277 at 576.170 kb on + strand, within EX28DRAFT_3277 at 576.308 kb on + strand, within EX28DRAFT_3278 at 576.309 kb on - strand, within EX28DRAFT_3278 at 576.311 kb on - strand, within EX28DRAFT_3278 at 576.349 kb on - strand, within EX28DRAFT_3278 at 576.804 kb on - strand at 576.805 kb on + strand at 576.805 kb on + strand at 576.806 kb on - strand at 576.806 kb on - strand at 576.806 kb on - strand at 576.806 kb on - strand at 576.816 kb on - strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.881 kb on - strand at 576.881 kb on - strand at 576.883 kb on - strand at 576.995 kb on - strand at 577.080 kb on + strand at 577.080 kb on + strand at 577.080 kb on + strand at 577.081 kb on - strand at 577.081 kb on - strand at 577.082 kb on + strand at 577.082 kb on + strand at 577.083 kb on - strand at 577.083 kb on - strand at 577.092 kb on + strand at 577.093 kb on - strand at 577.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 575,229 - EX28DRAFT_3276 0.67 -4.3 575,347 + EX28DRAFT_3276 0.75 -3.5 575,681 + -2.9 575,820 + EX28DRAFT_3277 0.19 +0.2 575,820 + EX28DRAFT_3277 0.19 +0.6 575,821 - EX28DRAFT_3277 0.19 -0.8 575,894 + EX28DRAFT_3277 0.34 +0.8 575,942 + EX28DRAFT_3277 0.43 +1.9 575,943 - EX28DRAFT_3277 0.43 +0.3 575,943 - EX28DRAFT_3277 0.43 -0.1 575,946 + EX28DRAFT_3277 0.44 -0.3 575,946 + EX28DRAFT_3277 0.44 -0.6 576,170 + EX28DRAFT_3277 0.88 +1.2 576,170 + EX28DRAFT_3277 0.88 +0.6 576,308 + EX28DRAFT_3278 0.13 +1.0 576,309 - EX28DRAFT_3278 0.13 +1.2 576,311 - EX28DRAFT_3278 0.13 +2.2 576,349 - EX28DRAFT_3278 0.19 +1.2 576,804 - +1.3 576,805 + +1.3 576,805 + +1.4 576,806 - +1.5 576,806 - +1.2 576,806 - +1.8 576,806 - +1.5 576,816 - +1.4 576,880 + +0.4 576,880 + +1.4 576,880 + -0.5 576,880 + +1.2 576,880 + +2.0 576,881 - +1.6 576,881 - +0.9 576,883 - +0.9 576,995 - +0.7 577,080 + +0.4 577,080 + +0.3 577,080 + +1.0 577,081 - -0.7 577,081 - +0.1 577,082 + +0.2 577,082 + +0.1 577,083 - +0.1 577,083 - +0.0 577,092 + -0.9 577,093 - -1.7 577,113 + -2.1
Or see this region's nucleotide sequence