Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3260 and EX28DRAFT_3261 are separated by 39 nucleotides EX28DRAFT_3261 and EX28DRAFT_3262 overlap by 4 nucleotides EX28DRAFT_3262 and EX28DRAFT_3263 are separated by 116 nucleotides EX28DRAFT_3263 and EX28DRAFT_3264 are separated by 4 nucleotides
EX28DRAFT_3260: EX28DRAFT_3260 - Phosphotransferase System HPr (HPr) Family, at 551,353 to 551,625
_3260
EX28DRAFT_3261: EX28DRAFT_3261 - monofunctional biosynthetic peptidoglycan transglycosylase, at 551,665 to 552,390
_3261
EX28DRAFT_3262: EX28DRAFT_3262 - Uncharacterized protein involved in an early stage of isoprenoid biosynthesis, at 552,387 to 553,043
_3262
EX28DRAFT_3263: EX28DRAFT_3263 - RNA, at 553,160 to 553,268
_3263
EX28DRAFT_3264: EX28DRAFT_3264 - PAS domain S-box, at 553,273 to 555,606
_3264
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 551.633 kb on + strand at 551.666 kb on + strand at 551.667 kb on - strand at 551.667 kb on - strand at 551.670 kb on + strand at 551.671 kb on - strand at 551.671 kb on - strand at 551.671 kb on - strand at 551.671 kb on - strand at 551.676 kb on + strand at 551.676 kb on + strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.677 kb on - strand at 551.680 kb on - strand at 551.725 kb on - strand at 551.751 kb on - strand, within EX28DRAFT_3261 at 551.751 kb on - strand, within EX28DRAFT_3261 at 551.852 kb on + strand, within EX28DRAFT_3261 at 551.881 kb on + strand, within EX28DRAFT_3261 at 551.912 kb on + strand, within EX28DRAFT_3261 at 552.001 kb on - strand, within EX28DRAFT_3261 at 552.215 kb on + strand, within EX28DRAFT_3261 at 552.295 kb on + strand, within EX28DRAFT_3261 at 552.296 kb on - strand, within EX28DRAFT_3261 at 552.335 kb on - strand at 552.335 kb on - strand at 552.465 kb on - strand, within EX28DRAFT_3262 at 552.465 kb on - strand, within EX28DRAFT_3262 at 552.465 kb on - strand, within EX28DRAFT_3262 at 552.466 kb on + strand, within EX28DRAFT_3262 at 552.492 kb on - strand, within EX28DRAFT_3262 at 552.691 kb on - strand, within EX28DRAFT_3262 at 552.734 kb on + strand, within EX28DRAFT_3262 at 552.806 kb on + strand, within EX28DRAFT_3262 at 552.807 kb on - strand, within EX28DRAFT_3262 at 552.819 kb on - strand, within EX28DRAFT_3262 at 552.834 kb on - strand, within EX28DRAFT_3262 at 552.852 kb on + strand, within EX28DRAFT_3262 at 552.984 kb on + strand at 552.985 kb on - strand at 553.001 kb on - strand at 553.127 kb on - strand at 553.148 kb on + strand at 553.149 kb on - strand at 553.149 kb on - strand at 553.152 kb on + strand at 553.456 kb on - strand at 553.456 kb on - strand at 553.589 kb on + strand, within EX28DRAFT_3264 at 553.589 kb on + strand, within EX28DRAFT_3264 at 553.590 kb on - strand, within EX28DRAFT_3264 at 553.590 kb on - strand, within EX28DRAFT_3264 at 553.590 kb on - strand, within EX28DRAFT_3264 at 553.690 kb on - strand, within EX28DRAFT_3264 at 553.733 kb on - strand, within EX28DRAFT_3264 at 553.757 kb on + strand, within EX28DRAFT_3264 at 553.898 kb on + strand, within EX28DRAFT_3264 at 553.993 kb on + strand, within EX28DRAFT_3264
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 551,633 + -0.1 551,666 + -0.8 551,667 - +0.2 551,667 - -0.2 551,670 + +1.9 551,671 - -0.2 551,671 - +0.4 551,671 - +0.3 551,671 - +0.0 551,676 + -0.6 551,676 + +0.1 551,677 - +0.5 551,677 - -0.2 551,677 - +0.2 551,677 - -0.4 551,677 - +0.1 551,680 - -0.0 551,725 - +0.3 551,751 - EX28DRAFT_3261 0.12 -0.5 551,751 - EX28DRAFT_3261 0.12 +0.0 551,852 + EX28DRAFT_3261 0.26 +0.8 551,881 + EX28DRAFT_3261 0.30 +0.3 551,912 + EX28DRAFT_3261 0.34 -0.1 552,001 - EX28DRAFT_3261 0.46 +0.1 552,215 + EX28DRAFT_3261 0.76 +0.2 552,295 + EX28DRAFT_3261 0.87 +0.1 552,296 - EX28DRAFT_3261 0.87 -0.2 552,335 - +0.7 552,335 - +0.2 552,465 - EX28DRAFT_3262 0.12 -0.1 552,465 - EX28DRAFT_3262 0.12 +0.8 552,465 - EX28DRAFT_3262 0.12 -0.0 552,466 + EX28DRAFT_3262 0.12 +1.3 552,492 - EX28DRAFT_3262 0.16 -1.8 552,691 - EX28DRAFT_3262 0.46 +0.0 552,734 + EX28DRAFT_3262 0.53 +0.0 552,806 + EX28DRAFT_3262 0.64 +0.4 552,807 - EX28DRAFT_3262 0.64 -0.3 552,819 - EX28DRAFT_3262 0.66 +0.8 552,834 - EX28DRAFT_3262 0.68 +0.5 552,852 + EX28DRAFT_3262 0.71 -0.2 552,984 + -0.3 552,985 - -3.2 553,001 - +1.1 553,127 - -1.8 553,148 + +0.1 553,149 - +0.8 553,149 - +1.0 553,152 + +0.1 553,456 - -0.3 553,456 - -0.1 553,589 + EX28DRAFT_3264 0.14 -0.3 553,589 + EX28DRAFT_3264 0.14 -0.7 553,590 - EX28DRAFT_3264 0.14 +0.1 553,590 - EX28DRAFT_3264 0.14 -0.9 553,590 - EX28DRAFT_3264 0.14 -0.4 553,690 - EX28DRAFT_3264 0.18 +0.9 553,733 - EX28DRAFT_3264 0.20 +0.1 553,757 + EX28DRAFT_3264 0.21 -0.3 553,898 + EX28DRAFT_3264 0.27 -0.6 553,993 + EX28DRAFT_3264 0.31 -0.3
Or see this region's nucleotide sequence