Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3207 and EX28DRAFT_3208 are separated by 7 nucleotides EX28DRAFT_3208 and EX28DRAFT_3209 are separated by 78 nucleotides
EX28DRAFT_3207: EX28DRAFT_3207 - Collagenase and related proteases, at 505,454 to 506,449
_3207
EX28DRAFT_3208: EX28DRAFT_3208 - Collagenase and related proteases, at 506,457 to 507,335
_3208
EX28DRAFT_3209: EX28DRAFT_3209 - luciferase family oxidoreductase, group 1, at 507,414 to 508,421
_3209
Position (kb) 506
507
508 Strain fitness (log2 ratio) -1
0
1
2
3 at 505.493 kb on - strand at 505.526 kb on + strand at 505.526 kb on + strand at 505.526 kb on + strand at 505.527 kb on - strand at 505.527 kb on - strand at 505.649 kb on + strand, within EX28DRAFT_3207 at 505.652 kb on - strand, within EX28DRAFT_3207 at 505.757 kb on + strand, within EX28DRAFT_3207 at 505.773 kb on - strand, within EX28DRAFT_3207 at 505.982 kb on + strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.994 kb on + strand, within EX28DRAFT_3207 at 505.995 kb on - strand, within EX28DRAFT_3207 at 505.995 kb on - strand, within EX28DRAFT_3207 at 505.995 kb on - strand, within EX28DRAFT_3207 at 506.291 kb on + strand, within EX28DRAFT_3207 at 506.329 kb on - strand, within EX28DRAFT_3207 at 506.357 kb on + strand at 506.358 kb on - strand at 506.358 kb on - strand at 506.358 kb on - strand at 506.430 kb on - strand at 506.438 kb on - strand at 506.463 kb on + strand at 506.463 kb on + strand at 506.464 kb on - strand at 506.464 kb on - strand at 506.484 kb on + strand at 506.484 kb on + strand at 506.774 kb on + strand, within EX28DRAFT_3208 at 506.811 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.055 kb on - strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.380 kb on + strand at 507.384 kb on - strand at 507.413 kb on + strand at 507.413 kb on + strand at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.623 kb on + strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.736 kb on + strand, within EX28DRAFT_3209 at 508.083 kb on - strand, within EX28DRAFT_3209 at 508.131 kb on - strand, within EX28DRAFT_3209 at 508.233 kb on + strand, within EX28DRAFT_3209 at 508.334 kb on + strand at 508.334 kb on + strand at 508.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 505,493 - -0.6 505,526 + -0.6 505,526 + +0.0 505,526 + +0.2 505,527 - +0.2 505,527 - +0.2 505,649 + EX28DRAFT_3207 0.20 -0.9 505,652 - EX28DRAFT_3207 0.20 +0.5 505,757 + EX28DRAFT_3207 0.30 +0.5 505,773 - EX28DRAFT_3207 0.32 +0.1 505,982 + EX28DRAFT_3207 0.53 +0.2 505,983 - EX28DRAFT_3207 0.53 +0.5 505,983 - EX28DRAFT_3207 0.53 -0.4 505,983 - EX28DRAFT_3207 0.53 +3.1 505,983 - EX28DRAFT_3207 0.53 +0.0 505,994 + EX28DRAFT_3207 0.54 +0.4 505,995 - EX28DRAFT_3207 0.54 -0.1 505,995 - EX28DRAFT_3207 0.54 -0.0 505,995 - EX28DRAFT_3207 0.54 -0.2 506,291 + EX28DRAFT_3207 0.84 +0.4 506,329 - EX28DRAFT_3207 0.88 -1.6 506,357 + +0.2 506,358 - +1.3 506,358 - -0.2 506,358 - -0.6 506,430 - +1.6 506,438 - -0.3 506,463 + +0.3 506,463 + +0.7 506,464 - +0.3 506,464 - -0.4 506,484 + -0.7 506,484 + -0.2 506,774 + EX28DRAFT_3208 0.36 +0.6 506,811 + EX28DRAFT_3208 0.40 -0.2 506,961 + EX28DRAFT_3208 0.57 +0.4 506,961 + EX28DRAFT_3208 0.57 +1.3 507,051 - EX28DRAFT_3208 0.68 +0.0 507,051 - EX28DRAFT_3208 0.68 -0.0 507,055 - EX28DRAFT_3208 0.68 +0.9 507,138 + EX28DRAFT_3208 0.77 +0.1 507,138 + EX28DRAFT_3208 0.77 -0.0 507,138 + EX28DRAFT_3208 0.77 +0.2 507,138 + EX28DRAFT_3208 0.77 -1.2 507,138 + EX28DRAFT_3208 0.77 +0.4 507,138 + EX28DRAFT_3208 0.77 +0.2 507,138 + EX28DRAFT_3208 0.77 -0.0 507,138 + EX28DRAFT_3208 0.77 -0.0 507,139 - EX28DRAFT_3208 0.78 +0.6 507,139 - EX28DRAFT_3208 0.78 +1.2 507,139 - EX28DRAFT_3208 0.78 +0.4 507,380 + -0.7 507,384 - +0.6 507,413 + -0.1 507,413 + -0.0 507,566 + EX28DRAFT_3209 0.15 -0.5 507,566 + EX28DRAFT_3209 0.15 +0.6 507,567 - EX28DRAFT_3209 0.15 +0.5 507,567 - EX28DRAFT_3209 0.15 -0.5 507,623 + EX28DRAFT_3209 0.21 -0.4 507,624 - EX28DRAFT_3209 0.21 -0.2 507,624 - EX28DRAFT_3209 0.21 -0.0 507,624 - EX28DRAFT_3209 0.21 -0.0 507,736 + EX28DRAFT_3209 0.32 +0.3 508,083 - EX28DRAFT_3209 0.66 -0.4 508,131 - EX28DRAFT_3209 0.71 +0.1 508,233 + EX28DRAFT_3209 0.81 +0.8 508,334 + +0.4 508,334 + -0.1 508,334 + +1.7
Or see this region's nucleotide sequence