Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3180 and EX28DRAFT_3181 overlap by 425 nucleotides EX28DRAFT_3181 and EX28DRAFT_3182 are separated by 59 nucleotides EX28DRAFT_3182 and EX28DRAFT_3183 are separated by 21 nucleotides
EX28DRAFT_3180: EX28DRAFT_3180 - hypothetical protein, at 481,831 to 482,346
_3180
EX28DRAFT_3181: EX28DRAFT_3181 - RNA, at 481,922 to 482,298
_3181
EX28DRAFT_3182: EX28DRAFT_3182 - 2-hydroxy-3-oxopropionate reductase, at 482,358 to 483,248
_3182
EX28DRAFT_3183: EX28DRAFT_3183 - 2-dehydro-3-deoxyglucarate aldolase, at 483,270 to 484,040
_3183
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 481.657 kb on - strand at 481.658 kb on + strand at 481.658 kb on + strand at 481.658 kb on + strand at 481.659 kb on - strand at 481.693 kb on + strand at 481.776 kb on + strand at 482.337 kb on + strand at 482.338 kb on - strand at 482.344 kb on + strand at 482.345 kb on - strand at 482.395 kb on + strand at 482.395 kb on + strand at 482.534 kb on + strand, within EX28DRAFT_3182 at 482.568 kb on - strand, within EX28DRAFT_3182 at 482.607 kb on - strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.804 kb on - strand, within EX28DRAFT_3182 at 482.804 kb on - strand, within EX28DRAFT_3182 at 482.806 kb on + strand, within EX28DRAFT_3182 at 482.806 kb on + strand, within EX28DRAFT_3182 at 482.806 kb on + strand, within EX28DRAFT_3182 at 482.807 kb on - strand, within EX28DRAFT_3182 at 482.807 kb on - strand, within EX28DRAFT_3182 at 482.957 kb on + strand, within EX28DRAFT_3182 at 482.957 kb on + strand, within EX28DRAFT_3182 at 482.957 kb on + strand, within EX28DRAFT_3182 at 482.966 kb on + strand, within EX28DRAFT_3182 at 483.173 kb on - strand at 483.194 kb on + strand at 483.195 kb on - strand at 483.248 kb on + strand at 483.249 kb on - strand at 483.365 kb on - strand, within EX28DRAFT_3183 at 483.525 kb on - strand, within EX28DRAFT_3183 at 483.628 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.712 kb on - strand, within EX28DRAFT_3183 at 483.806 kb on + strand, within EX28DRAFT_3183 at 484.034 kb on + strand at 484.068 kb on + strand at 484.071 kb on - strand at 484.071 kb on - strand at 484.088 kb on + strand at 484.159 kb on - strand at 484.160 kb on + strand at 484.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 481,657 - -1.2 481,658 + +0.2 481,658 + -0.5 481,658 + -0.8 481,659 - +0.1 481,693 + +0.3 481,776 + -0.1 482,337 + -0.2 482,338 - +0.2 482,344 + +0.0 482,345 - -1.7 482,395 + -0.1 482,395 + +0.6 482,534 + EX28DRAFT_3182 0.20 -0.3 482,568 - EX28DRAFT_3182 0.24 -0.4 482,607 - EX28DRAFT_3182 0.28 +0.5 482,803 + EX28DRAFT_3182 0.50 +0.2 482,803 + EX28DRAFT_3182 0.50 +0.5 482,803 + EX28DRAFT_3182 0.50 -0.5 482,803 + EX28DRAFT_3182 0.50 +0.6 482,804 - EX28DRAFT_3182 0.50 +1.3 482,804 - EX28DRAFT_3182 0.50 +0.6 482,806 + EX28DRAFT_3182 0.50 +0.5 482,806 + EX28DRAFT_3182 0.50 +0.4 482,806 + EX28DRAFT_3182 0.50 +0.1 482,807 - EX28DRAFT_3182 0.50 +0.0 482,807 - EX28DRAFT_3182 0.50 -0.0 482,957 + EX28DRAFT_3182 0.67 -2.5 482,957 + EX28DRAFT_3182 0.67 +0.8 482,957 + EX28DRAFT_3182 0.67 -0.1 482,966 + EX28DRAFT_3182 0.68 +1.4 483,173 - +0.3 483,194 + -1.7 483,195 - +1.0 483,248 + -1.6 483,249 - -0.2 483,365 - EX28DRAFT_3183 0.12 -0.8 483,525 - EX28DRAFT_3183 0.33 +1.0 483,628 + EX28DRAFT_3183 0.46 +0.2 483,711 + EX28DRAFT_3183 0.57 +0.3 483,711 + EX28DRAFT_3183 0.57 -0.2 483,712 - EX28DRAFT_3183 0.57 -1.0 483,806 + EX28DRAFT_3183 0.70 +0.6 484,034 + -0.2 484,068 + -0.4 484,071 - -0.0 484,071 - +1.8 484,088 + -0.4 484,159 - +0.0 484,160 + -0.5 484,202 - +0.1
Or see this region's nucleotide sequence