Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3084 and EX28DRAFT_3085 are separated by 10 nucleotides EX28DRAFT_3085 and EX28DRAFT_3086 are separated by 105 nucleotides EX28DRAFT_3086 and EX28DRAFT_3087 are separated by 107 nucleotides
EX28DRAFT_3084: EX28DRAFT_3084 - tRNA nucleotidyltransferase/poly(A) polymerase, at 396,415 to 397,656
_3084
EX28DRAFT_3085: EX28DRAFT_3085 - undecaprenyl-diphosphatase UppP, at 397,667 to 398,488
_3085
EX28DRAFT_3086: EX28DRAFT_3086 - dihydroneopterin aldolase, at 398,594 to 398,962
_3086
EX28DRAFT_3087: EX28DRAFT_3087 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 399,070 to 399,690
_3087
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1 at 397.683 kb on + strand at 397.683 kb on + strand at 397.683 kb on + strand at 397.735 kb on + strand at 397.736 kb on - strand at 397.842 kb on + strand, within EX28DRAFT_3085 at 397.849 kb on + strand, within EX28DRAFT_3085 at 397.850 kb on - strand, within EX28DRAFT_3085 at 397.850 kb on - strand, within EX28DRAFT_3085 at 397.852 kb on - strand, within EX28DRAFT_3085 at 397.852 kb on - strand, within EX28DRAFT_3085 at 398.014 kb on + strand, within EX28DRAFT_3085 at 398.028 kb on + strand, within EX28DRAFT_3085 at 398.029 kb on - strand, within EX28DRAFT_3085 at 398.096 kb on + strand, within EX28DRAFT_3085 at 398.097 kb on - strand, within EX28DRAFT_3085 at 398.118 kb on + strand, within EX28DRAFT_3085 at 398.119 kb on - strand, within EX28DRAFT_3085 at 398.206 kb on + strand, within EX28DRAFT_3085 at 398.207 kb on - strand, within EX28DRAFT_3085 at 398.320 kb on + strand, within EX28DRAFT_3085 at 398.398 kb on + strand, within EX28DRAFT_3085 at 398.399 kb on - strand, within EX28DRAFT_3085 at 398.454 kb on - strand at 398.490 kb on + strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.546 kb on + strand at 398.546 kb on + strand at 398.546 kb on + strand at 398.547 kb on - strand at 398.547 kb on - strand at 398.566 kb on - strand at 398.570 kb on + strand at 398.596 kb on - strand at 399.018 kb on - strand at 399.039 kb on + strand at 399.045 kb on + strand at 399.046 kb on - strand at 399.069 kb on + strand at 399.106 kb on + strand at 399.107 kb on - strand at 399.206 kb on + strand, within EX28DRAFT_3087 at 399.206 kb on + strand, within EX28DRAFT_3087 at 399.207 kb on - strand, within EX28DRAFT_3087 at 399.207 kb on - strand, within EX28DRAFT_3087 at 399.207 kb on - strand, within EX28DRAFT_3087 at 399.290 kb on - strand, within EX28DRAFT_3087 at 399.375 kb on + strand, within EX28DRAFT_3087
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 397,683 + +0.4 397,683 + +0.1 397,683 + +0.2 397,735 + -0.4 397,736 - -0.8 397,842 + EX28DRAFT_3085 0.21 -0.6 397,849 + EX28DRAFT_3085 0.22 +0.9 397,850 - EX28DRAFT_3085 0.22 +0.3 397,850 - EX28DRAFT_3085 0.22 +0.6 397,852 - EX28DRAFT_3085 0.23 -2.1 397,852 - EX28DRAFT_3085 0.23 +0.1 398,014 + EX28DRAFT_3085 0.42 +0.4 398,028 + EX28DRAFT_3085 0.44 +0.6 398,029 - EX28DRAFT_3085 0.44 +1.0 398,096 + EX28DRAFT_3085 0.52 -1.1 398,097 - EX28DRAFT_3085 0.52 +0.0 398,118 + EX28DRAFT_3085 0.55 -0.4 398,119 - EX28DRAFT_3085 0.55 +0.4 398,206 + EX28DRAFT_3085 0.66 +0.1 398,207 - EX28DRAFT_3085 0.66 -0.1 398,320 + EX28DRAFT_3085 0.79 -0.5 398,398 + EX28DRAFT_3085 0.89 -0.3 398,399 - EX28DRAFT_3085 0.89 -0.2 398,454 - -0.1 398,490 + +0.9 398,491 - +0.3 398,491 - -0.4 398,491 - -0.3 398,491 - -0.3 398,546 + -1.3 398,546 + -1.9 398,546 + +0.1 398,547 - -0.1 398,547 - -2.0 398,566 - +0.2 398,570 + +0.2 398,596 - -0.2 399,018 - -0.7 399,039 + +0.3 399,045 + +0.3 399,046 - +0.1 399,069 + -0.6 399,106 + -1.8 399,107 - -0.7 399,206 + EX28DRAFT_3087 0.22 -1.1 399,206 + EX28DRAFT_3087 0.22 -1.9 399,207 - EX28DRAFT_3087 0.22 -2.6 399,207 - EX28DRAFT_3087 0.22 -1.3 399,207 - EX28DRAFT_3087 0.22 -1.2 399,290 - EX28DRAFT_3087 0.35 -0.4 399,375 + EX28DRAFT_3087 0.49 -1.8
Or see this region's nucleotide sequence