Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2989 and EX28DRAFT_2990 are separated by 21 nucleotides EX28DRAFT_2990 and EX28DRAFT_2991 overlap by 4 nucleotides EX28DRAFT_2991 and EX28DRAFT_2992 are separated by 3 nucleotides EX28DRAFT_2992 and EX28DRAFT_2993 overlap by 8 nucleotides
EX28DRAFT_2989: EX28DRAFT_2989 - pyridoxal phosphate enzyme, YggS family, at 300,812 to 301,513
_2989
EX28DRAFT_2990: EX28DRAFT_2990 - Predicted integral membrane protein, at 301,535 to 302,101
_2990
EX28DRAFT_2991: EX28DRAFT_2991 - TIGR00251 family protein, at 302,098 to 302,394
_2991
EX28DRAFT_2992: EX28DRAFT_2992 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 302,398 to 302,991
_2992
EX28DRAFT_2993: EX28DRAFT_2993 - putative oxygen-independent coproporphyrinogen III oxidase, at 302,984 to 304,126
_2993
Position (kb) 302
303 Strain fitness (log2 ratio) -2
-1
0
1 at 301.401 kb on + strand, within EX28DRAFT_2989 at 301.432 kb on + strand, within EX28DRAFT_2989 at 301.462 kb on + strand at 301.511 kb on + strand at 301.512 kb on - strand at 301.514 kb on + strand at 301.515 kb on - strand at 301.579 kb on + strand at 301.801 kb on + strand, within EX28DRAFT_2990 at 302.021 kb on + strand, within EX28DRAFT_2990 at 302.022 kb on - strand, within EX28DRAFT_2990 at 302.068 kb on + strand at 302.143 kb on + strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.145 kb on + strand, within EX28DRAFT_2991 at 302.199 kb on - strand, within EX28DRAFT_2991 at 302.325 kb on + strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.393 kb on - strand at 302.393 kb on - strand at 302.460 kb on - strand, within EX28DRAFT_2992 at 302.460 kb on - strand, within EX28DRAFT_2992 at 302.460 kb on - strand, within EX28DRAFT_2992 at 302.724 kb on - strand, within EX28DRAFT_2992 at 302.769 kb on + strand, within EX28DRAFT_2992 at 302.966 kb on + strand at 303.013 kb on + strand at 303.014 kb on - strand at 303.014 kb on - strand at 303.141 kb on - strand, within EX28DRAFT_2993 at 303.463 kb on + strand, within EX28DRAFT_2993 at 303.667 kb on - strand, within EX28DRAFT_2993 at 303.667 kb on - strand, within EX28DRAFT_2993 at 303.720 kb on - strand, within EX28DRAFT_2993 at 303.744 kb on - strand, within EX28DRAFT_2993
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 301,401 + EX28DRAFT_2989 0.84 -0.0 301,432 + EX28DRAFT_2989 0.88 -1.9 301,462 + -2.3 301,511 + +1.3 301,512 - -0.2 301,514 + +0.6 301,515 - +0.2 301,579 + +0.2 301,801 + EX28DRAFT_2990 0.47 -0.1 302,021 + EX28DRAFT_2990 0.86 +0.2 302,022 - EX28DRAFT_2990 0.86 +0.4 302,068 + +0.5 302,143 + EX28DRAFT_2991 0.15 +0.4 302,144 - EX28DRAFT_2991 0.15 -0.5 302,144 - EX28DRAFT_2991 0.15 +0.1 302,144 - EX28DRAFT_2991 0.15 -0.7 302,144 - EX28DRAFT_2991 0.15 -0.3 302,145 + EX28DRAFT_2991 0.16 +0.0 302,199 - EX28DRAFT_2991 0.34 -1.2 302,325 + EX28DRAFT_2991 0.76 +0.6 302,326 - EX28DRAFT_2991 0.77 -0.3 302,326 - EX28DRAFT_2991 0.77 +0.1 302,326 - EX28DRAFT_2991 0.77 -0.0 302,326 - EX28DRAFT_2991 0.77 +0.8 302,393 - -0.1 302,393 - +0.5 302,460 - EX28DRAFT_2992 0.10 +0.4 302,460 - EX28DRAFT_2992 0.10 +0.4 302,460 - EX28DRAFT_2992 0.10 -0.2 302,724 - EX28DRAFT_2992 0.55 +1.3 302,769 + EX28DRAFT_2992 0.62 +0.4 302,966 + -0.9 303,013 + +0.5 303,014 - +0.1 303,014 - -0.3 303,141 - EX28DRAFT_2993 0.14 -2.4 303,463 + EX28DRAFT_2993 0.42 -0.0 303,667 - EX28DRAFT_2993 0.60 +0.1 303,667 - EX28DRAFT_2993 0.60 -0.1 303,720 - EX28DRAFT_2993 0.64 -0.1 303,744 - EX28DRAFT_2993 0.66 +0.4
Or see this region's nucleotide sequence