Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2977

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2976 and EX28DRAFT_2977 are separated by 52 nucleotidesEX28DRAFT_2977 and EX28DRAFT_2978 are separated by 230 nucleotides EX28DRAFT_2976: EX28DRAFT_2976 - outer membrane porin, OprD family, at 287,468 to 288,736 _2976 EX28DRAFT_2977: EX28DRAFT_2977 - agmatinase, at 288,789 to 289,709 _2977 EX28DRAFT_2978: EX28DRAFT_2978 - arginine decarboxylase (EC 4.1.1.19), at 289,940 to 291,916 _2978 Position (kb) 288 289 290Strain fitness (log2 ratio) -2 -1 0 1at 287.845 kb on + strand, within EX28DRAFT_2976at 287.846 kb on - strand, within EX28DRAFT_2976at 287.846 kb on - strand, within EX28DRAFT_2976at 287.894 kb on - strand, within EX28DRAFT_2976at 287.899 kb on + strand, within EX28DRAFT_2976at 287.933 kb on + strand, within EX28DRAFT_2976at 287.990 kb on + strand, within EX28DRAFT_2976at 288.068 kb on + strand, within EX28DRAFT_2976at 288.138 kb on - strand, within EX28DRAFT_2976at 288.205 kb on + strand, within EX28DRAFT_2976at 288.205 kb on + strand, within EX28DRAFT_2976at 288.285 kb on - strand, within EX28DRAFT_2976at 288.344 kb on + strand, within EX28DRAFT_2976at 288.344 kb on + strand, within EX28DRAFT_2976at 288.416 kb on + strand, within EX28DRAFT_2976at 288.593 kb on + strand, within EX28DRAFT_2976at 288.641 kb on + strandat 288.708 kb on - strandat 288.708 kb on - strandat 288.725 kb on - strandat 288.734 kb on + strandat 288.941 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.034 kb on - strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.044 kb on - strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.286 kb on + strand, within EX28DRAFT_2977at 289.651 kb on - strandat 289.672 kb on - strandat 289.698 kb on + strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.739 kb on - strandat 289.739 kb on - strandat 289.739 kb on - strandat 289.739 kb on - strandat 289.744 kb on + strandat 289.801 kb on + strandat 289.824 kb on - strandat 289.855 kb on + strandat 289.855 kb on + strandat 289.856 kb on - strandat 289.858 kb on - strandat 289.858 kb on - strandat 289.858 kb on - strandat 289.956 kb on + strandat 289.956 kb on + strandat 289.963 kb on - strandat 290.082 kb on + strandat 290.083 kb on - strandat 290.083 kb on - strandat 290.476 kb on + strand, within EX28DRAFT_2978at 290.597 kb on - strand, within EX28DRAFT_2978at 290.613 kb on + strand, within EX28DRAFT_2978

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
287,845 + EX28DRAFT_2976 0.30 +0.2
287,846 - EX28DRAFT_2976 0.30 -0.2
287,846 - EX28DRAFT_2976 0.30 +1.4
287,894 - EX28DRAFT_2976 0.34 -0.0
287,899 + EX28DRAFT_2976 0.34 -0.0
287,933 + EX28DRAFT_2976 0.37 -0.5
287,990 + EX28DRAFT_2976 0.41 +0.2
288,068 + EX28DRAFT_2976 0.47 +0.4
288,138 - EX28DRAFT_2976 0.53 +0.1
288,205 + EX28DRAFT_2976 0.58 +0.7
288,205 + EX28DRAFT_2976 0.58 -0.3
288,285 - EX28DRAFT_2976 0.64 +0.1
288,344 + EX28DRAFT_2976 0.69 +1.0
288,344 + EX28DRAFT_2976 0.69 -0.1
288,416 + EX28DRAFT_2976 0.75 -0.4
288,593 + EX28DRAFT_2976 0.89 +0.3
288,641 + +0.5
288,708 - -0.0
288,708 - -0.4
288,725 - +0.1
288,734 + +0.1
288,941 + EX28DRAFT_2977 0.17 +0.1
289,033 + EX28DRAFT_2977 0.26 -0.7
289,033 + EX28DRAFT_2977 0.26 -0.2
289,033 + EX28DRAFT_2977 0.26 -1.3
289,034 - EX28DRAFT_2977 0.27 -2.2
289,043 + EX28DRAFT_2977 0.28 -0.6
289,043 + EX28DRAFT_2977 0.28 -0.2
289,043 + EX28DRAFT_2977 0.28 +0.1
289,044 - EX28DRAFT_2977 0.28 -0.5
289,214 + EX28DRAFT_2977 0.46 -0.7
289,214 + EX28DRAFT_2977 0.46 -0.1
289,214 + EX28DRAFT_2977 0.46 +0.1
289,214 + EX28DRAFT_2977 0.46 -0.1
289,214 + EX28DRAFT_2977 0.46 -0.3
289,215 - EX28DRAFT_2977 0.46 +0.7
289,215 - EX28DRAFT_2977 0.46 -1.7
289,215 - EX28DRAFT_2977 0.46 -0.2
289,215 - EX28DRAFT_2977 0.46 -0.2
289,215 - EX28DRAFT_2977 0.46 -0.1
289,286 + EX28DRAFT_2977 0.54 +0.4
289,651 - +0.3
289,672 - +0.4
289,698 + -0.0
289,699 - +0.3
289,699 - +0.4
289,699 - -0.7
289,699 - +0.3
289,699 - +0.1
289,739 - +0.9
289,739 - +0.4
289,739 - +0.1
289,739 - -0.2
289,744 + +0.0
289,801 + +0.4
289,824 - +0.9
289,855 + +0.7
289,855 + +0.0
289,856 - +0.3
289,858 - -0.3
289,858 - -0.7
289,858 - -0.1
289,956 + +0.1
289,956 + -0.1
289,963 - +0.1
290,082 + -0.1
290,083 - -0.0
290,083 - -0.1
290,476 + EX28DRAFT_2978 0.27 -0.0
290,597 - EX28DRAFT_2978 0.33 -0.0
290,613 + EX28DRAFT_2978 0.34 -2.5

Or see this region's nucleotide sequence