Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2910 and EX28DRAFT_2911 are separated by 95 nucleotides EX28DRAFT_2911 and EX28DRAFT_2912 are separated by 118 nucleotides EX28DRAFT_2912 and EX28DRAFT_2913 are separated by 244 nucleotides
EX28DRAFT_2910: EX28DRAFT_2910 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 220,927 to 223,086
_2910
EX28DRAFT_2911: EX28DRAFT_2911 - RNA, at 223,182 to 223,267
_2911
EX28DRAFT_2912: EX28DRAFT_2912 - RNA, at 223,386 to 223,466
_2912
EX28DRAFT_2913: EX28DRAFT_2913 - Transcriptional regulators, at 223,711 to 224,727
_2913
Position (kb) 223
224 Strain fitness (log2 ratio) -1
0
1
2 at 222.511 kb on - strand, within EX28DRAFT_2910 at 222.511 kb on - strand, within EX28DRAFT_2910 at 222.541 kb on - strand, within EX28DRAFT_2910 at 222.597 kb on + strand, within EX28DRAFT_2910 at 222.597 kb on + strand, within EX28DRAFT_2910 at 222.597 kb on + strand, within EX28DRAFT_2910 at 222.598 kb on - strand, within EX28DRAFT_2910 at 222.656 kb on + strand, within EX28DRAFT_2910 at 222.657 kb on - strand, within EX28DRAFT_2910 at 222.735 kb on - strand, within EX28DRAFT_2910 at 222.765 kb on + strand, within EX28DRAFT_2910 at 222.766 kb on - strand, within EX28DRAFT_2910 at 222.814 kb on + strand, within EX28DRAFT_2910 at 222.891 kb on - strand at 222.912 kb on + strand at 222.912 kb on + strand at 222.912 kb on + strand at 222.913 kb on - strand at 222.913 kb on - strand at 222.913 kb on - strand at 222.913 kb on - strand at 222.914 kb on + strand at 222.914 kb on + strand at 222.914 kb on + strand at 222.914 kb on + strand at 222.915 kb on - strand at 222.946 kb on + strand at 222.968 kb on - strand at 223.054 kb on - strand at 223.065 kb on + strand at 223.082 kb on - strand at 223.082 kb on - strand at 223.123 kb on - strand at 223.126 kb on - strand at 223.126 kb on - strand at 223.126 kb on - strand at 223.141 kb on - strand at 223.226 kb on - strand, within EX28DRAFT_2911 at 223.235 kb on + strand, within EX28DRAFT_2911 at 223.236 kb on - strand, within EX28DRAFT_2911 at 223.349 kb on - strand at 223.419 kb on - strand, within EX28DRAFT_2912 at 223.419 kb on - strand, within EX28DRAFT_2912 at 223.451 kb on + strand, within EX28DRAFT_2912 at 223.452 kb on - strand, within EX28DRAFT_2912 at 223.457 kb on + strand, within EX28DRAFT_2912 at 223.458 kb on - strand, within EX28DRAFT_2912 at 223.458 kb on - strand, within EX28DRAFT_2912 at 223.458 kb on - strand, within EX28DRAFT_2912 at 223.478 kb on - strand at 223.490 kb on - strand at 223.492 kb on + strand at 223.493 kb on - strand at 223.493 kb on - strand at 223.493 kb on - strand at 223.534 kb on + strand at 223.844 kb on - strand, within EX28DRAFT_2913 at 223.844 kb on - strand, within EX28DRAFT_2913 at 223.844 kb on - strand, within EX28DRAFT_2913 at 224.007 kb on + strand, within EX28DRAFT_2913 at 224.008 kb on - strand, within EX28DRAFT_2913 at 224.306 kb on - strand, within EX28DRAFT_2913 at 224.440 kb on + strand, within EX28DRAFT_2913
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 222,511 - EX28DRAFT_2910 0.73 -0.6 222,511 - EX28DRAFT_2910 0.73 -1.5 222,541 - EX28DRAFT_2910 0.75 -0.3 222,597 + EX28DRAFT_2910 0.77 +0.1 222,597 + EX28DRAFT_2910 0.77 -0.7 222,597 + EX28DRAFT_2910 0.77 +0.6 222,598 - EX28DRAFT_2910 0.77 +0.9 222,656 + EX28DRAFT_2910 0.80 -0.3 222,657 - EX28DRAFT_2910 0.80 -0.3 222,735 - EX28DRAFT_2910 0.84 +0.0 222,765 + EX28DRAFT_2910 0.85 -0.3 222,766 - EX28DRAFT_2910 0.85 +0.3 222,814 + EX28DRAFT_2910 0.87 +0.0 222,891 - +0.9 222,912 + -0.0 222,912 + -1.4 222,912 + -0.4 222,913 - +0.2 222,913 - +0.2 222,913 - -0.2 222,913 - -0.1 222,914 + -0.3 222,914 + +0.4 222,914 + -0.2 222,914 + -0.3 222,915 - +0.0 222,946 + -1.5 222,968 - +0.8 223,054 - +0.4 223,065 + -0.2 223,082 - +2.5 223,082 - -0.2 223,123 - -0.7 223,126 - -0.0 223,126 - -0.4 223,126 - +0.3 223,141 - -0.2 223,226 - EX28DRAFT_2911 0.51 +0.0 223,235 + EX28DRAFT_2911 0.62 +0.3 223,236 - EX28DRAFT_2911 0.63 -0.5 223,349 - -1.1 223,419 - EX28DRAFT_2912 0.41 -0.4 223,419 - EX28DRAFT_2912 0.41 +0.1 223,451 + EX28DRAFT_2912 0.80 +0.3 223,452 - EX28DRAFT_2912 0.81 +0.3 223,457 + EX28DRAFT_2912 0.88 +0.2 223,458 - EX28DRAFT_2912 0.89 +0.1 223,458 - EX28DRAFT_2912 0.89 +0.5 223,458 - EX28DRAFT_2912 0.89 +0.2 223,478 - -0.4 223,490 - -0.7 223,492 + -1.3 223,493 - +0.1 223,493 - -0.3 223,493 - +0.4 223,534 + +0.6 223,844 - EX28DRAFT_2913 0.13 +0.1 223,844 - EX28DRAFT_2913 0.13 -0.8 223,844 - EX28DRAFT_2913 0.13 +0.4 224,007 + EX28DRAFT_2913 0.29 +0.4 224,008 - EX28DRAFT_2913 0.29 +0.4 224,306 - EX28DRAFT_2913 0.59 +0.4 224,440 + EX28DRAFT_2913 0.72 +0.6
Or see this region's nucleotide sequence