Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2889 and EX28DRAFT_2890 are separated by 208 nucleotides EX28DRAFT_2890 and EX28DRAFT_2891 are separated by 44 nucleotides EX28DRAFT_2891 and EX28DRAFT_2892 are separated by 88 nucleotides
EX28DRAFT_2889: EX28DRAFT_2889 - Membrane-bound lytic murein transglycosylase, at 193,997 to 195,094
_2889
EX28DRAFT_2890: EX28DRAFT_2890 - tRNA, at 195,303 to 195,379
_2890
EX28DRAFT_2891: EX28DRAFT_2891 - tRNA, at 195,424 to 195,500
_2891
EX28DRAFT_2892: EX28DRAFT_2892 - N-acetylmuramoyl-L-alanine amidase, at 195,589 to 196,857
_2892
Position (kb) 195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 194.496 kb on + strand, within EX28DRAFT_2889 at 194.496 kb on + strand, within EX28DRAFT_2889 at 194.497 kb on - strand, within EX28DRAFT_2889 at 194.538 kb on + strand, within EX28DRAFT_2889 at 194.589 kb on + strand, within EX28DRAFT_2889 at 194.602 kb on - strand, within EX28DRAFT_2889 at 194.668 kb on + strand, within EX28DRAFT_2889 at 194.673 kb on + strand, within EX28DRAFT_2889 at 194.674 kb on - strand, within EX28DRAFT_2889 at 194.677 kb on + strand, within EX28DRAFT_2889 at 194.678 kb on - strand, within EX28DRAFT_2889 at 194.730 kb on + strand, within EX28DRAFT_2889 at 194.730 kb on + strand, within EX28DRAFT_2889 at 194.806 kb on + strand, within EX28DRAFT_2889 at 194.806 kb on + strand, within EX28DRAFT_2889 at 194.853 kb on + strand, within EX28DRAFT_2889 at 194.853 kb on + strand, within EX28DRAFT_2889 at 194.854 kb on - strand, within EX28DRAFT_2889 at 194.854 kb on - strand, within EX28DRAFT_2889 at 194.860 kb on + strand, within EX28DRAFT_2889 at 194.874 kb on + strand, within EX28DRAFT_2889 at 194.967 kb on - strand, within EX28DRAFT_2889 at 195.000 kb on + strand at 195.001 kb on - strand at 195.001 kb on - strand at 195.001 kb on - strand at 195.073 kb on - strand at 195.095 kb on + strand at 195.095 kb on + strand at 195.096 kb on - strand at 195.096 kb on - strand at 195.096 kb on - strand at 195.098 kb on - strand at 195.098 kb on - strand at 195.098 kb on - strand at 195.098 kb on - strand at 195.098 kb on - strand at 195.098 kb on - strand at 195.248 kb on - strand at 195.339 kb on + strand, within EX28DRAFT_2890 at 195.397 kb on - strand at 195.502 kb on + strand at 195.503 kb on - strand at 195.517 kb on + strand at 195.690 kb on + strand at 195.691 kb on - strand at 195.792 kb on + strand, within EX28DRAFT_2892 at 195.885 kb on + strand, within EX28DRAFT_2892 at 195.885 kb on + strand, within EX28DRAFT_2892 at 195.885 kb on + strand, within EX28DRAFT_2892 at 195.885 kb on + strand, within EX28DRAFT_2892 at 195.886 kb on - strand, within EX28DRAFT_2892 at 195.886 kb on - strand, within EX28DRAFT_2892 at 195.886 kb on - strand, within EX28DRAFT_2892 at 196.119 kb on + strand, within EX28DRAFT_2892 at 196.137 kb on + strand, within EX28DRAFT_2892 at 196.137 kb on + strand, within EX28DRAFT_2892 at 196.140 kb on - strand, within EX28DRAFT_2892 at 196.140 kb on - strand, within EX28DRAFT_2892 at 196.149 kb on + strand, within EX28DRAFT_2892 at 196.361 kb on + strand, within EX28DRAFT_2892 at 196.395 kb on + strand, within EX28DRAFT_2892 at 196.440 kb on + strand, within EX28DRAFT_2892 at 196.441 kb on - strand, within EX28DRAFT_2892
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 194,496 + EX28DRAFT_2889 0.45 -0.5 194,496 + EX28DRAFT_2889 0.45 +0.7 194,497 - EX28DRAFT_2889 0.46 +0.6 194,538 + EX28DRAFT_2889 0.49 +0.7 194,589 + EX28DRAFT_2889 0.54 -0.6 194,602 - EX28DRAFT_2889 0.55 +0.0 194,668 + EX28DRAFT_2889 0.61 -1.1 194,673 + EX28DRAFT_2889 0.62 +2.2 194,674 - EX28DRAFT_2889 0.62 +0.3 194,677 + EX28DRAFT_2889 0.62 +0.3 194,678 - EX28DRAFT_2889 0.62 +0.0 194,730 + EX28DRAFT_2889 0.67 -0.9 194,730 + EX28DRAFT_2889 0.67 -0.4 194,806 + EX28DRAFT_2889 0.74 -0.4 194,806 + EX28DRAFT_2889 0.74 +0.4 194,853 + EX28DRAFT_2889 0.78 -0.6 194,853 + EX28DRAFT_2889 0.78 -2.9 194,854 - EX28DRAFT_2889 0.78 +0.0 194,854 - EX28DRAFT_2889 0.78 +0.2 194,860 + EX28DRAFT_2889 0.79 +0.3 194,874 + EX28DRAFT_2889 0.80 +0.1 194,967 - EX28DRAFT_2889 0.88 -0.6 195,000 + -1.1 195,001 - +0.3 195,001 - +0.2 195,001 - +0.5 195,073 - -0.5 195,095 + -0.1 195,095 + -0.6 195,096 - +1.1 195,096 - +0.2 195,096 - +0.4 195,098 - +1.0 195,098 - +1.3 195,098 - +0.1 195,098 - +0.1 195,098 - +0.6 195,098 - +0.1 195,248 - -2.7 195,339 + EX28DRAFT_2890 0.47 -1.0 195,397 - +0.8 195,502 + +0.3 195,503 - -0.6 195,517 + +0.3 195,690 + -0.2 195,691 - -0.9 195,792 + EX28DRAFT_2892 0.16 +0.4 195,885 + EX28DRAFT_2892 0.23 -0.0 195,885 + EX28DRAFT_2892 0.23 +0.0 195,885 + EX28DRAFT_2892 0.23 +0.2 195,885 + EX28DRAFT_2892 0.23 +2.1 195,886 - EX28DRAFT_2892 0.23 -0.4 195,886 - EX28DRAFT_2892 0.23 +0.0 195,886 - EX28DRAFT_2892 0.23 -0.4 196,119 + EX28DRAFT_2892 0.42 +0.1 196,137 + EX28DRAFT_2892 0.43 +0.4 196,137 + EX28DRAFT_2892 0.43 +0.2 196,140 - EX28DRAFT_2892 0.43 +0.7 196,140 - EX28DRAFT_2892 0.43 -0.4 196,149 + EX28DRAFT_2892 0.44 +0.2 196,361 + EX28DRAFT_2892 0.61 -0.2 196,395 + EX28DRAFT_2892 0.64 +0.1 196,440 + EX28DRAFT_2892 0.67 +0.6 196,441 - EX28DRAFT_2892 0.67 +0.1
Or see this region's nucleotide sequence