Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2879

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2878 and EX28DRAFT_2879 are separated by 65 nucleotidesEX28DRAFT_2879 and EX28DRAFT_2880 are separated by 112 nucleotidesEX28DRAFT_2880 and EX28DRAFT_2881 are separated by 110 nucleotides EX28DRAFT_2878: EX28DRAFT_2878 - serine transporter, at 184,551 to 185,846 _2878 EX28DRAFT_2879: EX28DRAFT_2879 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 185,912 to 187,279 _2879 EX28DRAFT_2880: EX28DRAFT_2880 - 5'-3' exonuclease (including N-terminal domain of PolI), at 187,392 to 188,147 _2880 EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358 _2881 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -2 -1 0 1at 185.006 kb on + strand, within EX28DRAFT_2878at 185.069 kb on + strand, within EX28DRAFT_2878at 185.265 kb on + strand, within EX28DRAFT_2878at 185.265 kb on + strand, within EX28DRAFT_2878at 185.336 kb on + strand, within EX28DRAFT_2878at 185.411 kb on + strand, within EX28DRAFT_2878at 185.422 kb on - strand, within EX28DRAFT_2878at 185.540 kb on + strand, within EX28DRAFT_2878at 185.747 kb on + strandat 185.747 kb on + strandat 185.748 kb on - strandat 185.785 kb on + strandat 185.786 kb on - strandat 185.786 kb on - strandat 185.786 kb on - strandat 185.789 kb on + strandat 185.790 kb on - strandat 185.832 kb on + strandat 185.833 kb on - strandat 185.833 kb on - strandat 185.922 kb on + strandat 186.037 kb on + strandat 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.058 kb on - strand, within EX28DRAFT_2879at 186.058 kb on - strand, within EX28DRAFT_2879at 186.094 kb on + strand, within EX28DRAFT_2879at 186.148 kb on + strand, within EX28DRAFT_2879at 186.326 kb on + strand, within EX28DRAFT_2879at 186.327 kb on - strand, within EX28DRAFT_2879at 186.338 kb on + strand, within EX28DRAFT_2879at 186.338 kb on + strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.342 kb on - strand, within EX28DRAFT_2879at 186.361 kb on + strand, within EX28DRAFT_2879at 186.515 kb on - strand, within EX28DRAFT_2879at 186.646 kb on + strand, within EX28DRAFT_2879at 186.888 kb on - strand, within EX28DRAFT_2879at 186.889 kb on + strand, within EX28DRAFT_2879at 186.889 kb on + strand, within EX28DRAFT_2879at 186.890 kb on - strand, within EX28DRAFT_2879at 186.890 kb on - strand, within EX28DRAFT_2879at 187.036 kb on + strand, within EX28DRAFT_2879at 187.074 kb on + strand, within EX28DRAFT_2879at 187.075 kb on - strand, within EX28DRAFT_2879at 187.075 kb on - strand, within EX28DRAFT_2879at 187.080 kb on + strand, within EX28DRAFT_2879at 187.097 kb on - strand, within EX28DRAFT_2879at 187.135 kb on + strand, within EX28DRAFT_2879at 187.334 kb on + strandat 187.335 kb on - strandat 187.376 kb on - strandat 187.387 kb on + strandat 187.405 kb on + strandat 187.405 kb on + strandat 187.818 kb on + strand, within EX28DRAFT_2880at 187.819 kb on - strand, within EX28DRAFT_2880at 187.819 kb on - strand, within EX28DRAFT_2880at 188.001 kb on + strand, within EX28DRAFT_2880at 188.002 kb on - strand, within EX28DRAFT_2880at 188.092 kb on + strandat 188.092 kb on + strandat 188.104 kb on + strandat 188.104 kb on + strandat 188.123 kb on - strandat 188.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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185,006 + EX28DRAFT_2878 0.35 +0.7
185,069 + EX28DRAFT_2878 0.40 -0.2
185,265 + EX28DRAFT_2878 0.55 -1.3
185,265 + EX28DRAFT_2878 0.55 +0.1
185,336 + EX28DRAFT_2878 0.61 +0.9
185,411 + EX28DRAFT_2878 0.66 +0.2
185,422 - EX28DRAFT_2878 0.67 +0.1
185,540 + EX28DRAFT_2878 0.76 -0.1
185,747 + -0.9
185,747 + +1.0
185,748 - -0.5
185,785 + +0.3
185,786 - +0.3
185,786 - -0.2
185,786 - +0.7
185,789 + +0.3
185,790 - +1.2
185,832 + -0.3
185,833 - +0.6
185,833 - +0.3
185,922 + -0.1
186,037 + -0.3
186,057 + EX28DRAFT_2879 0.11 -0.4
186,057 + EX28DRAFT_2879 0.11 +0.2
186,057 + EX28DRAFT_2879 0.11 -0.3
186,057 + EX28DRAFT_2879 0.11 -0.1
186,057 + EX28DRAFT_2879 0.11 -0.2
186,058 - EX28DRAFT_2879 0.11 -1.1
186,058 - EX28DRAFT_2879 0.11 -0.2
186,094 + EX28DRAFT_2879 0.13 -0.1
186,148 + EX28DRAFT_2879 0.17 +0.1
186,326 + EX28DRAFT_2879 0.30 -2.6
186,327 - EX28DRAFT_2879 0.30 +0.2
186,338 + EX28DRAFT_2879 0.31 -1.4
186,338 + EX28DRAFT_2879 0.31 -2.1
186,339 - EX28DRAFT_2879 0.31 +0.5
186,339 - EX28DRAFT_2879 0.31 -1.6
186,339 - EX28DRAFT_2879 0.31 -0.5
186,339 - EX28DRAFT_2879 0.31 -0.0
186,341 + EX28DRAFT_2879 0.31 -0.6
186,341 + EX28DRAFT_2879 0.31 -0.0
186,341 + EX28DRAFT_2879 0.31 +0.4
186,341 + EX28DRAFT_2879 0.31 +0.0
186,342 - EX28DRAFT_2879 0.31 -0.3
186,361 + EX28DRAFT_2879 0.33 -0.0
186,515 - EX28DRAFT_2879 0.44 +0.5
186,646 + EX28DRAFT_2879 0.54 -0.2
186,888 - EX28DRAFT_2879 0.71 -1.7
186,889 + EX28DRAFT_2879 0.71 -0.1
186,889 + EX28DRAFT_2879 0.71 +0.3
186,890 - EX28DRAFT_2879 0.71 -0.2
186,890 - EX28DRAFT_2879 0.71 +0.0
187,036 + EX28DRAFT_2879 0.82 +0.1
187,074 + EX28DRAFT_2879 0.85 +0.9
187,075 - EX28DRAFT_2879 0.85 -0.7
187,075 - EX28DRAFT_2879 0.85 -0.1
187,080 + EX28DRAFT_2879 0.85 +0.3
187,097 - EX28DRAFT_2879 0.87 +0.6
187,135 + EX28DRAFT_2879 0.89 +0.0
187,334 + -0.5
187,335 - +0.5
187,376 - -0.7
187,387 + -0.4
187,405 + +0.2
187,405 + -0.5
187,818 + EX28DRAFT_2880 0.56 +0.3
187,819 - EX28DRAFT_2880 0.56 +0.2
187,819 - EX28DRAFT_2880 0.56 +0.1
188,001 + EX28DRAFT_2880 0.81 +0.0
188,002 - EX28DRAFT_2880 0.81 +0.2
188,092 + -0.8
188,092 + +0.5
188,104 + +0.3
188,104 + -0.1
188,123 - +0.1
188,137 + -0.4

Or see this region's nucleotide sequence