Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2796 and EX28DRAFT_2797 overlap by 8 nucleotides EX28DRAFT_2797 and EX28DRAFT_2798 overlap by 4 nucleotides EX28DRAFT_2798 and EX28DRAFT_2799 are separated by 186 nucleotides
EX28DRAFT_2796: EX28DRAFT_2796 - transcriptional regulator, DeoR family, at 98,230 to 99,003
_2796
EX28DRAFT_2797: EX28DRAFT_2797 - KpsF/GutQ family protein, at 98,996 to 99,961
_2797
EX28DRAFT_2798: EX28DRAFT_2798 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 99,958 to 101,472
_2798
EX28DRAFT_2799: EX28DRAFT_2799 - Uncharacterized flavoproteins, at 101,659 to 103,107
_2799
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 99.280 kb on + strand, within EX28DRAFT_2797 at 99.280 kb on + strand, within EX28DRAFT_2797 at 99.280 kb on + strand, within EX28DRAFT_2797 at 99.412 kb on + strand, within EX28DRAFT_2797 at 99.955 kb on + strand at 99.960 kb on - strand at 99.960 kb on - strand at 100.133 kb on - strand, within EX28DRAFT_2798 at 100.133 kb on - strand, within EX28DRAFT_2798 at 100.133 kb on - strand, within EX28DRAFT_2798 at 100.560 kb on - strand, within EX28DRAFT_2798 at 100.751 kb on + strand, within EX28DRAFT_2798 at 100.751 kb on + strand, within EX28DRAFT_2798 at 101.002 kb on + strand, within EX28DRAFT_2798 at 101.472 kb on + strand at 101.473 kb on - strand at 101.563 kb on + strand at 101.641 kb on + strand at 101.658 kb on + strand at 101.658 kb on + strand at 101.658 kb on + strand at 101.659 kb on - strand at 101.665 kb on - strand at 101.770 kb on + strand at 101.771 kb on - strand at 101.771 kb on - strand at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.879 kb on - strand, within EX28DRAFT_2799 at 101.879 kb on - strand, within EX28DRAFT_2799 at 101.939 kb on - strand, within EX28DRAFT_2799 at 101.939 kb on - strand, within EX28DRAFT_2799 at 101.956 kb on - strand, within EX28DRAFT_2799 at 101.956 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 102.121 kb on + strand, within EX28DRAFT_2799 at 102.173 kb on - strand, within EX28DRAFT_2799 at 102.241 kb on + strand, within EX28DRAFT_2799 at 102.371 kb on + strand, within EX28DRAFT_2799 at 102.382 kb on + strand, within EX28DRAFT_2799 at 102.403 kb on + strand, within EX28DRAFT_2799
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 99,280 + EX28DRAFT_2797 0.29 +0.3 99,280 + EX28DRAFT_2797 0.29 -0.1 99,280 + EX28DRAFT_2797 0.29 -0.4 99,412 + EX28DRAFT_2797 0.43 -0.2 99,955 + -0.2 99,960 - +0.3 99,960 - +0.1 100,133 - EX28DRAFT_2798 0.12 +0.6 100,133 - EX28DRAFT_2798 0.12 -0.2 100,133 - EX28DRAFT_2798 0.12 -0.3 100,560 - EX28DRAFT_2798 0.40 +0.2 100,751 + EX28DRAFT_2798 0.52 -0.1 100,751 + EX28DRAFT_2798 0.52 -0.0 101,002 + EX28DRAFT_2798 0.69 +0.7 101,472 + -0.7 101,473 - -0.5 101,563 + -0.2 101,641 + +0.1 101,658 + -1.0 101,658 + -0.0 101,658 + +0.3 101,659 - +0.4 101,665 - -0.1 101,770 + +0.5 101,771 - +0.6 101,771 - -0.1 101,878 + EX28DRAFT_2799 0.15 -0.4 101,878 + EX28DRAFT_2799 0.15 -0.4 101,878 + EX28DRAFT_2799 0.15 -0.5 101,879 - EX28DRAFT_2799 0.15 +3.2 101,879 - EX28DRAFT_2799 0.15 -0.8 101,939 - EX28DRAFT_2799 0.19 +0.3 101,939 - EX28DRAFT_2799 0.19 -0.4 101,956 - EX28DRAFT_2799 0.20 -0.2 101,956 - EX28DRAFT_2799 0.20 +0.5 101,960 - EX28DRAFT_2799 0.21 +0.4 101,960 - EX28DRAFT_2799 0.21 +0.1 101,960 - EX28DRAFT_2799 0.21 +0.1 102,121 + EX28DRAFT_2799 0.32 -2.9 102,173 - EX28DRAFT_2799 0.35 -0.5 102,241 + EX28DRAFT_2799 0.40 +0.6 102,371 + EX28DRAFT_2799 0.49 +0.6 102,382 + EX28DRAFT_2799 0.50 +0.0 102,403 + EX28DRAFT_2799 0.51 +0.4
Or see this region's nucleotide sequence