Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2729

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2727 and EX28DRAFT_2728 overlap by 9 nucleotidesEX28DRAFT_2728 and EX28DRAFT_2729 overlap by 4 nucleotidesEX28DRAFT_2729 and EX28DRAFT_2730 overlap by 41 nucleotides EX28DRAFT_2727: EX28DRAFT_2727 - Uncharacterized conserved protein, at 28,681 to 29,238 _2727 EX28DRAFT_2728: EX28DRAFT_2728 - hypothetical protein, at 29,230 to 30,021 _2728 EX28DRAFT_2729: EX28DRAFT_2729 - RNA polymerase sigma factor, sigma-70 family, at 30,018 to 30,596 _2729 EX28DRAFT_2730: EX28DRAFT_2730 - TPR repeat, at 30,556 to 31,083 _2730 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1at 29.163 kb on + strand, within EX28DRAFT_2727at 29.233 kb on + strandat 29.251 kb on + strandat 29.251 kb on + strandat 29.312 kb on + strand, within EX28DRAFT_2728at 29.389 kb on + strand, within EX28DRAFT_2728at 29.400 kb on + strand, within EX28DRAFT_2728at 29.401 kb on - strand, within EX28DRAFT_2728at 29.401 kb on - strand, within EX28DRAFT_2728at 29.465 kb on + strand, within EX28DRAFT_2728at 29.616 kb on - strand, within EX28DRAFT_2728at 29.616 kb on - strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.694 kb on - strand, within EX28DRAFT_2728at 29.966 kb on - strandat 29.966 kb on - strandat 29.966 kb on - strandat 30.224 kb on + strand, within EX28DRAFT_2729at 30.224 kb on + strand, within EX28DRAFT_2729at 30.224 kb on + strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.227 kb on - strand, within EX28DRAFT_2729at 30.227 kb on - strand, within EX28DRAFT_2729at 30.338 kb on + strand, within EX28DRAFT_2729at 30.884 kb on + strand, within EX28DRAFT_2730at 30.885 kb on - strand, within EX28DRAFT_2730at 30.885 kb on - strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.891 kb on - strand, within EX28DRAFT_2730at 30.891 kb on - strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.960 kb on - strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.003 kb on - strand, within EX28DRAFT_2730at 31.006 kb on - strand, within EX28DRAFT_2730at 31.078 kb on - strandat 31.078 kb on - strandat 31.083 kb on + strandat 31.084 kb on - strandat 31.084 kb on - strandat 31.084 kb on - strandat 31.085 kb on + strandat 31.085 kb on + strandat 31.085 kb on + strandat 31.086 kb on - strandat 31.086 kb on - strandat 31.118 kb on + strandat 31.140 kb on + strandat 31.374 kb on + strandat 31.380 kb on - strandat 31.380 kb on - strandat 31.398 kb on - strandat 31.405 kb on - strandat 31.410 kb on - strandat 31.580 kb on - strandat 31.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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29,163 + EX28DRAFT_2727 0.86 +0.5
29,233 + -0.2
29,251 + +0.2
29,251 + +0.1
29,312 + EX28DRAFT_2728 0.10 -0.4
29,389 + EX28DRAFT_2728 0.20 +1.1
29,400 + EX28DRAFT_2728 0.21 -0.6
29,401 - EX28DRAFT_2728 0.22 -0.0
29,401 - EX28DRAFT_2728 0.22 +0.5
29,465 + EX28DRAFT_2728 0.30 -0.6
29,616 - EX28DRAFT_2728 0.49 -0.5
29,616 - EX28DRAFT_2728 0.49 +0.3
29,625 + EX28DRAFT_2728 0.50 -0.4
29,625 + EX28DRAFT_2728 0.50 +0.3
29,625 + EX28DRAFT_2728 0.50 -0.0
29,626 - EX28DRAFT_2728 0.50 -0.2
29,626 - EX28DRAFT_2728 0.50 +0.1
29,626 - EX28DRAFT_2728 0.50 +0.1
29,626 - EX28DRAFT_2728 0.50 +0.5
29,626 - EX28DRAFT_2728 0.50 +0.7
29,627 + EX28DRAFT_2728 0.50 -0.5
29,627 + EX28DRAFT_2728 0.50 -0.5
29,627 + EX28DRAFT_2728 0.50 -0.0
29,628 - EX28DRAFT_2728 0.50 +0.3
29,628 - EX28DRAFT_2728 0.50 -0.5
29,628 - EX28DRAFT_2728 0.50 -0.2
29,628 - EX28DRAFT_2728 0.50 +1.4
29,659 - EX28DRAFT_2728 0.54 -1.3
29,659 - EX28DRAFT_2728 0.54 +0.8
29,659 - EX28DRAFT_2728 0.54 +1.4
29,694 - EX28DRAFT_2728 0.59 +0.0
29,966 - -0.2
29,966 - +0.7
29,966 - +0.1
30,224 + EX28DRAFT_2729 0.36 +0.3
30,224 + EX28DRAFT_2729 0.36 +0.1
30,224 + EX28DRAFT_2729 0.36 -1.4
30,225 - EX28DRAFT_2729 0.36 +0.2
30,225 - EX28DRAFT_2729 0.36 +1.2
30,225 - EX28DRAFT_2729 0.36 -0.7
30,225 - EX28DRAFT_2729 0.36 +0.5
30,225 - EX28DRAFT_2729 0.36 +0.5
30,225 - EX28DRAFT_2729 0.36 +0.6
30,225 - EX28DRAFT_2729 0.36 -0.1
30,226 + EX28DRAFT_2729 0.36 +0.5
30,226 + EX28DRAFT_2729 0.36 -0.0
30,226 + EX28DRAFT_2729 0.36 +1.7
30,227 - EX28DRAFT_2729 0.36 +0.7
30,227 - EX28DRAFT_2729 0.36 +0.2
30,338 + EX28DRAFT_2729 0.55 +0.0
30,884 + EX28DRAFT_2730 0.62 -2.1
30,885 - EX28DRAFT_2730 0.62 -0.0
30,885 - EX28DRAFT_2730 0.62 +0.1
30,890 + EX28DRAFT_2730 0.63 +0.6
30,890 + EX28DRAFT_2730 0.63 -0.0
30,890 + EX28DRAFT_2730 0.63 +0.3
30,891 - EX28DRAFT_2730 0.63 +0.1
30,891 - EX28DRAFT_2730 0.63 -1.2
30,959 + EX28DRAFT_2730 0.76 +0.0
30,959 + EX28DRAFT_2730 0.76 -0.2
30,959 + EX28DRAFT_2730 0.76 +0.4
30,960 - EX28DRAFT_2730 0.77 +0.8
31,002 + EX28DRAFT_2730 0.84 +0.3
31,002 + EX28DRAFT_2730 0.84 -0.2
31,002 + EX28DRAFT_2730 0.84 -0.5
31,002 + EX28DRAFT_2730 0.84 -0.8
31,003 - EX28DRAFT_2730 0.85 -0.3
31,006 - EX28DRAFT_2730 0.85 +0.6
31,078 - -0.3
31,078 - +0.9
31,083 + -0.4
31,084 - +0.3
31,084 - -0.2
31,084 - +0.9
31,085 + +0.1
31,085 + -0.1
31,085 + +0.2
31,086 - -0.6
31,086 - -0.5
31,118 + -0.1
31,140 + -0.1
31,374 + +0.6
31,380 - -0.0
31,380 - +0.8
31,398 - +0.1
31,405 - -0.2
31,410 - -0.1
31,580 - -0.2
31,588 + +0.5

Or see this region's nucleotide sequence