Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2638 and EX28DRAFT_2639 are separated by 71 nucleotides EX28DRAFT_2639 and EX28DRAFT_2640 overlap by 8 nucleotides EX28DRAFT_2640 and EX28DRAFT_2641 overlap by 8 nucleotides EX28DRAFT_2641 and EX28DRAFT_2642 are separated by 215 nucleotides
EX28DRAFT_2638: EX28DRAFT_2638 - hypothetical protein, at 2,678,999 to 2,679,259
_2638
EX28DRAFT_2639: EX28DRAFT_2639 - hypothetical protein, at 2,679,331 to 2,679,780
_2639
EX28DRAFT_2640: EX28DRAFT_2640 - hypothetical protein, at 2,679,773 to 2,680,054
_2640
EX28DRAFT_2641: EX28DRAFT_2641 - Ash protein family, at 2,680,047 to 2,680,382
_2641
EX28DRAFT_2642: EX28DRAFT_2642 - transcriptional regulator, AlpA family, at 2,680,598 to 2,680,864
_2642
Position (kb)
2680
2681 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2679.076 kb on - strand, within EX28DRAFT_2638 at 2679.122 kb on - strand, within EX28DRAFT_2638 at 2679.233 kb on + strand, within EX28DRAFT_2638 at 2679.233 kb on + strand, within EX28DRAFT_2638 at 2679.299 kb on - strand at 2679.478 kb on + strand, within EX28DRAFT_2639 at 2679.478 kb on + strand, within EX28DRAFT_2639 at 2679.479 kb on - strand, within EX28DRAFT_2639 at 2679.537 kb on + strand, within EX28DRAFT_2639 at 2679.542 kb on - strand, within EX28DRAFT_2639 at 2679.561 kb on + strand, within EX28DRAFT_2639 at 2679.561 kb on + strand, within EX28DRAFT_2639 at 2679.562 kb on - strand, within EX28DRAFT_2639 at 2679.562 kb on - strand, within EX28DRAFT_2639 at 2679.616 kb on - strand, within EX28DRAFT_2639 at 2679.635 kb on + strand, within EX28DRAFT_2639 at 2679.635 kb on + strand, within EX28DRAFT_2639 at 2679.750 kb on - strand at 2679.835 kb on + strand, within EX28DRAFT_2640 at 2679.858 kb on + strand, within EX28DRAFT_2640 at 2679.859 kb on - strand, within EX28DRAFT_2640 at 2679.859 kb on - strand, within EX28DRAFT_2640 at 2679.880 kb on - strand, within EX28DRAFT_2640 at 2679.880 kb on - strand, within EX28DRAFT_2640 at 2679.880 kb on - strand, within EX28DRAFT_2640 at 2679.889 kb on + strand, within EX28DRAFT_2640 at 2680.048 kb on + strand at 2680.048 kb on + strand at 2680.048 kb on + strand at 2680.099 kb on + strand, within EX28DRAFT_2641 at 2680.099 kb on + strand, within EX28DRAFT_2641 at 2680.209 kb on - strand, within EX28DRAFT_2641 at 2680.383 kb on + strand at 2680.384 kb on - strand at 2680.384 kb on - strand at 2680.404 kb on + strand at 2680.404 kb on + strand at 2680.404 kb on + strand at 2680.425 kb on + strand at 2680.426 kb on - strand at 2680.440 kb on + strand at 2680.441 kb on - strand at 2680.448 kb on - strand at 2680.488 kb on - strand at 2680.488 kb on - strand at 2680.579 kb on - strand at 2680.817 kb on + strand, within EX28DRAFT_2642 at 2680.818 kb on - strand, within EX28DRAFT_2642 at 2680.818 kb on - strand, within EX28DRAFT_2642 at 2680.818 kb on - strand, within EX28DRAFT_2642 at 2680.850 kb on + strand at 2680.865 kb on - strand at 2680.902 kb on - strand at 2680.995 kb on + strand at 2680.996 kb on - strand at 2680.996 kb on - strand at 2680.997 kb on + strand at 2680.997 kb on + strand at 2680.997 kb on + strand at 2680.997 kb on + strand at 2680.997 kb on + strand at 2680.998 kb on - strand at 2680.998 kb on - strand at 2681.000 kb on - strand at 2681.003 kb on + strand at 2681.004 kb on - strand at 2681.004 kb on - strand at 2681.004 kb on - strand at 2681.009 kb on + strand at 2681.009 kb on + strand at 2681.014 kb on + strand at 2681.086 kb on + strand at 2681.087 kb on - strand at 2681.099 kb on + strand at 2681.239 kb on - strand at 2681.245 kb on + strand at 2681.251 kb on + strand at 2681.251 kb on + strand at 2681.251 kb on + strand at 2681.252 kb on - strand at 2681.252 kb on - strand at 2681.252 kb on - strand at 2681.350 kb on + strand at 2681.368 kb on + strand at 2681.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,679,076 - EX28DRAFT_2638 0.30 -1.2 2,679,122 - EX28DRAFT_2638 0.47 -0.3 2,679,233 + EX28DRAFT_2638 0.90 +0.1 2,679,233 + EX28DRAFT_2638 0.90 +0.1 2,679,299 - +1.0 2,679,478 + EX28DRAFT_2639 0.33 +0.4 2,679,478 + EX28DRAFT_2639 0.33 +0.1 2,679,479 - EX28DRAFT_2639 0.33 -0.3 2,679,537 + EX28DRAFT_2639 0.46 +0.6 2,679,542 - EX28DRAFT_2639 0.47 -0.1 2,679,561 + EX28DRAFT_2639 0.51 -0.1 2,679,561 + EX28DRAFT_2639 0.51 +0.0 2,679,562 - EX28DRAFT_2639 0.51 -4.8 2,679,562 - EX28DRAFT_2639 0.51 -0.1 2,679,616 - EX28DRAFT_2639 0.63 -0.5 2,679,635 + EX28DRAFT_2639 0.68 -1.1 2,679,635 + EX28DRAFT_2639 0.68 +1.1 2,679,750 - +0.5 2,679,835 + EX28DRAFT_2640 0.22 +0.5 2,679,858 + EX28DRAFT_2640 0.30 -0.2 2,679,859 - EX28DRAFT_2640 0.30 +0.3 2,679,859 - EX28DRAFT_2640 0.30 -2.7 2,679,880 - EX28DRAFT_2640 0.38 +0.4 2,679,880 - EX28DRAFT_2640 0.38 -3.0 2,679,880 - EX28DRAFT_2640 0.38 +0.4 2,679,889 + EX28DRAFT_2640 0.41 -0.4 2,680,048 + +0.5 2,680,048 + -0.4 2,680,048 + +0.7 2,680,099 + EX28DRAFT_2641 0.15 -1.4 2,680,099 + EX28DRAFT_2641 0.15 -0.5 2,680,209 - EX28DRAFT_2641 0.48 +0.1 2,680,383 + -1.1 2,680,384 - +0.9 2,680,384 - -2.7 2,680,404 + +0.1 2,680,404 + +0.8 2,680,404 + +0.8 2,680,425 + +0.3 2,680,426 - +0.2 2,680,440 + -0.2 2,680,441 - +0.5 2,680,448 - +1.0 2,680,488 - -0.2 2,680,488 - -0.2 2,680,579 - -0.1 2,680,817 + EX28DRAFT_2642 0.82 +0.3 2,680,818 - EX28DRAFT_2642 0.82 -0.4 2,680,818 - EX28DRAFT_2642 0.82 -0.1 2,680,818 - EX28DRAFT_2642 0.82 -0.3 2,680,850 + +0.1 2,680,865 - +0.3 2,680,902 - -0.3 2,680,995 + +0.6 2,680,996 - -0.3 2,680,996 - +0.9 2,680,997 + -0.3 2,680,997 + +0.1 2,680,997 + +0.2 2,680,997 + -0.3 2,680,997 + -0.0 2,680,998 - -0.0 2,680,998 - +0.0 2,681,000 - -0.7 2,681,003 + +0.0 2,681,004 - +0.0 2,681,004 - +0.0 2,681,004 - -0.3 2,681,009 + +0.8 2,681,009 + -0.4 2,681,014 + +0.4 2,681,086 + +0.1 2,681,087 - -0.1 2,681,099 + +0.3 2,681,239 - +0.8 2,681,245 + -0.9 2,681,251 + -1.5 2,681,251 + +0.2 2,681,251 + -0.0 2,681,252 - -0.4 2,681,252 - +0.9 2,681,252 - +0.1 2,681,350 + +0.2 2,681,368 + +0.2 2,681,368 + +0.1
Or see this region's nucleotide sequence