Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2617 and EX28DRAFT_2618 are separated by 665 nucleotides EX28DRAFT_2618 and EX28DRAFT_2619 are separated by 17 nucleotides
EX28DRAFT_2617: EX28DRAFT_2617 - Ion channel, at 2,655,188 to 2,655,883
_2617
EX28DRAFT_2618: EX28DRAFT_2618 - Uncharacterized protein conserved in bacteria, at 2,656,549 to 2,657,043
_2618
EX28DRAFT_2619: EX28DRAFT_2619 - diguanylate cyclase (GGDEF) domain, at 2,657,061 to 2,658,992
_2619
Position (kb)
2656
2657
2658 Strain fitness (log2 ratio)
-1
0
1 at 2655.595 kb on + strand, within EX28DRAFT_2617 at 2655.607 kb on + strand, within EX28DRAFT_2617 at 2655.667 kb on + strand, within EX28DRAFT_2617 at 2655.759 kb on + strand, within EX28DRAFT_2617 at 2655.775 kb on + strand, within EX28DRAFT_2617 at 2655.813 kb on - strand, within EX28DRAFT_2617 at 2655.851 kb on - strand at 2655.912 kb on + strand at 2655.913 kb on - strand at 2655.981 kb on - strand at 2656.294 kb on + strand at 2656.303 kb on + strand at 2656.487 kb on + strand at 2656.572 kb on - strand at 2656.747 kb on + strand, within EX28DRAFT_2618 at 2656.818 kb on + strand, within EX28DRAFT_2618 at 2656.818 kb on + strand, within EX28DRAFT_2618 at 2656.819 kb on - strand, within EX28DRAFT_2618 at 2656.819 kb on - strand, within EX28DRAFT_2618 at 2656.875 kb on + strand, within EX28DRAFT_2618 at 2657.060 kb on - strand at 2657.112 kb on + strand at 2657.113 kb on - strand at 2657.206 kb on - strand at 2657.259 kb on - strand, within EX28DRAFT_2619 at 2657.291 kb on + strand, within EX28DRAFT_2619 at 2657.329 kb on + strand, within EX28DRAFT_2619 at 2657.329 kb on + strand, within EX28DRAFT_2619 at 2657.562 kb on - strand, within EX28DRAFT_2619 at 2657.597 kb on - strand, within EX28DRAFT_2619 at 2657.845 kb on + strand, within EX28DRAFT_2619 at 2657.883 kb on + strand, within EX28DRAFT_2619 at 2657.884 kb on - strand, within EX28DRAFT_2619 at 2657.921 kb on - strand, within EX28DRAFT_2619
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,655,595 + EX28DRAFT_2617 0.58 -1.6 2,655,607 + EX28DRAFT_2617 0.60 -1.5 2,655,667 + EX28DRAFT_2617 0.69 -0.1 2,655,759 + EX28DRAFT_2617 0.82 +0.2 2,655,775 + EX28DRAFT_2617 0.84 +0.2 2,655,813 - EX28DRAFT_2617 0.90 +0.3 2,655,851 - -0.2 2,655,912 + +0.4 2,655,913 - +0.3 2,655,981 - -0.3 2,656,294 + +0.2 2,656,303 + -0.4 2,656,487 + -0.2 2,656,572 - -1.1 2,656,747 + EX28DRAFT_2618 0.40 -0.3 2,656,818 + EX28DRAFT_2618 0.54 +0.6 2,656,818 + EX28DRAFT_2618 0.54 +0.2 2,656,819 - EX28DRAFT_2618 0.55 +0.1 2,656,819 - EX28DRAFT_2618 0.55 +0.5 2,656,875 + EX28DRAFT_2618 0.66 +1.4 2,657,060 - -0.3 2,657,112 + +0.4 2,657,113 - +0.0 2,657,206 - +0.1 2,657,259 - EX28DRAFT_2619 0.10 +0.2 2,657,291 + EX28DRAFT_2619 0.12 -0.0 2,657,329 + EX28DRAFT_2619 0.14 -0.0 2,657,329 + EX28DRAFT_2619 0.14 +0.2 2,657,562 - EX28DRAFT_2619 0.26 +0.8 2,657,597 - EX28DRAFT_2619 0.28 -0.2 2,657,845 + EX28DRAFT_2619 0.41 +0.7 2,657,883 + EX28DRAFT_2619 0.43 +0.4 2,657,884 - EX28DRAFT_2619 0.43 -0.3 2,657,921 - EX28DRAFT_2619 0.45 +0.9
Or see this region's nucleotide sequence