Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2598

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2596 and EX28DRAFT_2597 are separated by 115 nucleotidesEX28DRAFT_2597 and EX28DRAFT_2598 are separated by 204 nucleotidesEX28DRAFT_2598 and EX28DRAFT_2599 are separated by 2 nucleotidesEX28DRAFT_2599 and EX28DRAFT_2600 are separated by 91 nucleotides EX28DRAFT_2596: EX28DRAFT_2596 - ABC-type long-chain fatty acid transport system, fused permease and ATPase components, at 2,629,703 to 2,630,923 _2596 EX28DRAFT_2597: EX28DRAFT_2597 - Amidases related to nicotinamidase, at 2,631,039 to 2,631,572 _2597 EX28DRAFT_2598: EX28DRAFT_2598 - Beta-lactamase class C and other penicillin binding proteins, at 2,631,777 to 2,632,937 _2598 EX28DRAFT_2599: EX28DRAFT_2599 - Cyclic nucleotide-binding domain, at 2,632,940 to 2,633,563 _2599 EX28DRAFT_2600: EX28DRAFT_2600 - outer membrane autotransporter barrel domain, at 2,633,655 to 2,636,432 _2600 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -2 -1 0 1at 2630.872 kb on + strandat 2630.872 kb on + strandat 2630.872 kb on + strandat 2630.918 kb on - strandat 2630.918 kb on - strandat 2630.918 kb on - strandat 2630.923 kb on + strandat 2630.923 kb on + strandat 2630.923 kb on + strandat 2630.924 kb on - strandat 2631.176 kb on + strand, within EX28DRAFT_2597at 2631.176 kb on + strand, within EX28DRAFT_2597at 2631.177 kb on - strand, within EX28DRAFT_2597at 2631.177 kb on - strand, within EX28DRAFT_2597at 2631.179 kb on + strand, within EX28DRAFT_2597at 2631.179 kb on + strand, within EX28DRAFT_2597at 2631.230 kb on + strand, within EX28DRAFT_2597at 2631.325 kb on + strand, within EX28DRAFT_2597at 2631.325 kb on + strand, within EX28DRAFT_2597at 2631.325 kb on + strand, within EX28DRAFT_2597at 2631.326 kb on - strand, within EX28DRAFT_2597at 2631.326 kb on - strand, within EX28DRAFT_2597at 2631.355 kb on + strand, within EX28DRAFT_2597at 2631.525 kb on + strandat 2631.649 kb on + strandat 2631.650 kb on - strandat 2631.660 kb on + strandat 2631.664 kb on + strandat 2631.665 kb on - strandat 2631.695 kb on - strandat 2631.728 kb on + strandat 2631.731 kb on + strandat 2631.732 kb on - strandat 2631.733 kb on + strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.737 kb on + strandat 2631.737 kb on + strandat 2631.745 kb on - strandat 2631.745 kb on - strandat 2631.866 kb on - strandat 2631.900 kb on - strand, within EX28DRAFT_2598at 2631.900 kb on - strand, within EX28DRAFT_2598at 2631.903 kb on + strand, within EX28DRAFT_2598at 2631.904 kb on - strand, within EX28DRAFT_2598at 2631.996 kb on - strand, within EX28DRAFT_2598at 2632.119 kb on + strand, within EX28DRAFT_2598at 2632.120 kb on - strand, within EX28DRAFT_2598at 2632.150 kb on - strand, within EX28DRAFT_2598at 2632.150 kb on - strand, within EX28DRAFT_2598at 2632.240 kb on + strand, within EX28DRAFT_2598at 2632.240 kb on + strand, within EX28DRAFT_2598at 2632.240 kb on + strand, within EX28DRAFT_2598at 2632.241 kb on - strand, within EX28DRAFT_2598at 2632.241 kb on - strand, within EX28DRAFT_2598at 2632.241 kb on - strand, within EX28DRAFT_2598at 2632.276 kb on - strand, within EX28DRAFT_2598at 2632.324 kb on - strand, within EX28DRAFT_2598at 2632.383 kb on + strand, within EX28DRAFT_2598at 2632.436 kb on + strand, within EX28DRAFT_2598at 2632.503 kb on - strand, within EX28DRAFT_2598at 2632.506 kb on - strand, within EX28DRAFT_2598at 2632.716 kb on + strand, within EX28DRAFT_2598at 2632.716 kb on + strand, within EX28DRAFT_2598at 2632.716 kb on + strand, within EX28DRAFT_2598at 2632.717 kb on - strand, within EX28DRAFT_2598at 2632.717 kb on - strand, within EX28DRAFT_2598at 2632.719 kb on - strand, within EX28DRAFT_2598at 2632.785 kb on + strand, within EX28DRAFT_2598at 2632.785 kb on + strand, within EX28DRAFT_2598at 2632.785 kb on + strand, within EX28DRAFT_2598at 2632.785 kb on + strand, within EX28DRAFT_2598at 2632.785 kb on + strand, within EX28DRAFT_2598at 2632.785 kb on + strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.786 kb on - strand, within EX28DRAFT_2598at 2632.787 kb on + strand, within EX28DRAFT_2598at 2632.787 kb on + strand, within EX28DRAFT_2598at 2632.794 kb on - strand, within EX28DRAFT_2598at 2632.877 kb on + strandat 2632.931 kb on + strandat 2632.998 kb on + strandat 2632.998 kb on + strandat 2632.998 kb on + strandat 2632.999 kb on - strandat 2632.999 kb on - strandat 2632.999 kb on - strandat 2633.069 kb on - strand, within EX28DRAFT_2599at 2633.149 kb on - strand, within EX28DRAFT_2599at 2633.155 kb on + strand, within EX28DRAFT_2599at 2633.155 kb on + strand, within EX28DRAFT_2599at 2633.156 kb on - strand, within EX28DRAFT_2599at 2633.156 kb on - strand, within EX28DRAFT_2599at 2633.193 kb on + strand, within EX28DRAFT_2599at 2633.193 kb on + strand, within EX28DRAFT_2599at 2633.193 kb on + strand, within EX28DRAFT_2599at 2633.193 kb on + strand, within EX28DRAFT_2599at 2633.193 kb on + strand, within EX28DRAFT_2599at 2633.194 kb on - strand, within EX28DRAFT_2599at 2633.194 kb on - strand, within EX28DRAFT_2599at 2633.239 kb on - strand, within EX28DRAFT_2599at 2633.239 kb on - strand, within EX28DRAFT_2599at 2633.299 kb on + strand, within EX28DRAFT_2599at 2633.299 kb on + strand, within EX28DRAFT_2599at 2633.341 kb on + strand, within EX28DRAFT_2599at 2633.438 kb on - strand, within EX28DRAFT_2599at 2633.468 kb on + strand, within EX28DRAFT_2599at 2633.469 kb on - strand, within EX28DRAFT_2599at 2633.488 kb on + strand, within EX28DRAFT_2599at 2633.489 kb on - strand, within EX28DRAFT_2599at 2633.489 kb on - strand, within EX28DRAFT_2599at 2633.583 kb on + strandat 2633.584 kb on - strandat 2633.608 kb on - strandat 2633.619 kb on - strandat 2633.666 kb on + strandat 2633.666 kb on + strandat 2633.668 kb on + strandat 2633.668 kb on + strandat 2633.722 kb on + strandat 2633.722 kb on + strandat 2633.723 kb on - strandat 2633.723 kb on - strandat 2633.723 kb on - strandat 2633.738 kb on - strandat 2633.831 kb on + strandat 2633.858 kb on - strandat 2633.864 kb on - strandat 2633.864 kb on - strandat 2633.864 kb on - strandat 2633.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,630,872 + -0.2
2,630,872 + -0.2
2,630,872 + -0.2
2,630,918 - -0.3
2,630,918 - +0.6
2,630,918 - +0.4
2,630,923 + -1.2
2,630,923 + -0.1
2,630,923 + +0.0
2,630,924 - -0.5
2,631,176 + EX28DRAFT_2597 0.26 -0.4
2,631,176 + EX28DRAFT_2597 0.26 +0.5
2,631,177 - EX28DRAFT_2597 0.26 -1.1
2,631,177 - EX28DRAFT_2597 0.26 -0.5
2,631,179 + EX28DRAFT_2597 0.26 -0.2
2,631,179 + EX28DRAFT_2597 0.26 +0.3
2,631,230 + EX28DRAFT_2597 0.36 +0.1
2,631,325 + EX28DRAFT_2597 0.54 -0.3
2,631,325 + EX28DRAFT_2597 0.54 +0.1
2,631,325 + EX28DRAFT_2597 0.54 -0.7
2,631,326 - EX28DRAFT_2597 0.54 +0.1
2,631,326 - EX28DRAFT_2597 0.54 +0.3
2,631,355 + EX28DRAFT_2597 0.59 -0.4
2,631,525 + +0.6
2,631,649 + -0.6
2,631,650 - +0.1
2,631,660 + +0.1
2,631,664 + +0.0
2,631,665 - +0.1
2,631,695 - -0.4
2,631,728 + -0.3
2,631,731 + +0.5
2,631,732 - -0.3
2,631,733 + -0.7
2,631,734 - -0.1
2,631,734 - -0.0
2,631,734 - +0.2
2,631,734 - +0.3
2,631,734 - +0.7
2,631,734 - +0.4
2,631,734 - -0.1
2,631,734 - +0.2
2,631,737 + +0.1
2,631,737 + +0.3
2,631,745 - -0.2
2,631,745 - +0.5
2,631,866 - +0.1
2,631,900 - EX28DRAFT_2598 0.11 -2.2
2,631,900 - EX28DRAFT_2598 0.11 +0.3
2,631,903 + EX28DRAFT_2598 0.11 -0.2
2,631,904 - EX28DRAFT_2598 0.11 +0.4
2,631,996 - EX28DRAFT_2598 0.19 -0.1
2,632,119 + EX28DRAFT_2598 0.29 +0.1
2,632,120 - EX28DRAFT_2598 0.30 +0.2
2,632,150 - EX28DRAFT_2598 0.32 -0.5
2,632,150 - EX28DRAFT_2598 0.32 +0.1
2,632,240 + EX28DRAFT_2598 0.40 +0.6
2,632,240 + EX28DRAFT_2598 0.40 +0.2
2,632,240 + EX28DRAFT_2598 0.40 -0.2
2,632,241 - EX28DRAFT_2598 0.40 +0.1
2,632,241 - EX28DRAFT_2598 0.40 +0.1
2,632,241 - EX28DRAFT_2598 0.40 -0.2
2,632,276 - EX28DRAFT_2598 0.43 +0.3
2,632,324 - EX28DRAFT_2598 0.47 +0.1
2,632,383 + EX28DRAFT_2598 0.52 +0.6
2,632,436 + EX28DRAFT_2598 0.57 +0.1
2,632,503 - EX28DRAFT_2598 0.63 +0.2
2,632,506 - EX28DRAFT_2598 0.63 -0.3
2,632,716 + EX28DRAFT_2598 0.81 +0.4
2,632,716 + EX28DRAFT_2598 0.81 +0.4
2,632,716 + EX28DRAFT_2598 0.81 +1.0
2,632,717 - EX28DRAFT_2598 0.81 +0.2
2,632,717 - EX28DRAFT_2598 0.81 -0.3
2,632,719 - EX28DRAFT_2598 0.81 +0.2
2,632,785 + EX28DRAFT_2598 0.87 +0.4
2,632,785 + EX28DRAFT_2598 0.87 +0.8
2,632,785 + EX28DRAFT_2598 0.87 +0.2
2,632,785 + EX28DRAFT_2598 0.87 +0.4
2,632,785 + EX28DRAFT_2598 0.87 +0.8
2,632,785 + EX28DRAFT_2598 0.87 +0.5
2,632,786 - EX28DRAFT_2598 0.87 +0.9
2,632,786 - EX28DRAFT_2598 0.87 +0.2
2,632,786 - EX28DRAFT_2598 0.87 +0.9
2,632,786 - EX28DRAFT_2598 0.87 +0.4
2,632,786 - EX28DRAFT_2598 0.87 +0.0
2,632,786 - EX28DRAFT_2598 0.87 +0.8
2,632,786 - EX28DRAFT_2598 0.87 +0.5
2,632,786 - EX28DRAFT_2598 0.87 -0.3
2,632,786 - EX28DRAFT_2598 0.87 +1.0
2,632,786 - EX28DRAFT_2598 0.87 +0.7
2,632,787 + EX28DRAFT_2598 0.87 +0.2
2,632,787 + EX28DRAFT_2598 0.87 -0.1
2,632,794 - EX28DRAFT_2598 0.88 +0.4
2,632,877 + -0.1
2,632,931 + +0.4
2,632,998 + +0.2
2,632,998 + -0.0
2,632,998 + +0.3
2,632,999 - +0.6
2,632,999 - -0.7
2,632,999 - +0.6
2,633,069 - EX28DRAFT_2599 0.21 -0.9
2,633,149 - EX28DRAFT_2599 0.33 +1.3
2,633,155 + EX28DRAFT_2599 0.34 -0.4
2,633,155 + EX28DRAFT_2599 0.34 -0.3
2,633,156 - EX28DRAFT_2599 0.35 +0.4
2,633,156 - EX28DRAFT_2599 0.35 -0.0
2,633,193 + EX28DRAFT_2599 0.41 +0.1
2,633,193 + EX28DRAFT_2599 0.41 +0.0
2,633,193 + EX28DRAFT_2599 0.41 +1.4
2,633,193 + EX28DRAFT_2599 0.41 -0.4
2,633,193 + EX28DRAFT_2599 0.41 +0.2
2,633,194 - EX28DRAFT_2599 0.41 +0.4
2,633,194 - EX28DRAFT_2599 0.41 -0.3
2,633,239 - EX28DRAFT_2599 0.48 -1.2
2,633,239 - EX28DRAFT_2599 0.48 -1.0
2,633,299 + EX28DRAFT_2599 0.58 -0.6
2,633,299 + EX28DRAFT_2599 0.58 -0.3
2,633,341 + EX28DRAFT_2599 0.64 -0.6
2,633,438 - EX28DRAFT_2599 0.80 +0.4
2,633,468 + EX28DRAFT_2599 0.85 +0.7
2,633,469 - EX28DRAFT_2599 0.85 +0.0
2,633,488 + EX28DRAFT_2599 0.88 +0.2
2,633,489 - EX28DRAFT_2599 0.88 -0.1
2,633,489 - EX28DRAFT_2599 0.88 -0.2
2,633,583 + -0.1
2,633,584 - -0.1
2,633,608 - -0.0
2,633,619 - +1.2
2,633,666 + -0.4
2,633,666 + +0.4
2,633,668 + +0.0
2,633,668 + -0.8
2,633,722 + -1.0
2,633,722 + +0.4
2,633,723 - +0.2
2,633,723 - +0.2
2,633,723 - +0.2
2,633,738 - +0.1
2,633,831 + +1.3
2,633,858 - -0.4
2,633,864 - +0.2
2,633,864 - +0.9
2,633,864 - +0.1
2,633,879 - -0.1

Or see this region's nucleotide sequence