Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2590 and EX28DRAFT_2591 are separated by 168 nucleotides EX28DRAFT_2591 and EX28DRAFT_2592 are separated by 103 nucleotides EX28DRAFT_2592 and EX28DRAFT_2593 overlap by 4 nucleotides EX28DRAFT_2593 and EX28DRAFT_2594 are separated by 249 nucleotides EX28DRAFT_2594 and EX28DRAFT_2595 overlap by 4 nucleotides
EX28DRAFT_2590: EX28DRAFT_2590 - Arabinose efflux permease, at 2,624,551 to 2,625,765
_2590
EX28DRAFT_2591: EX28DRAFT_2591 - Uncharacterized protein conserved in bacteria, at 2,625,934 to 2,626,617
_2591
EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821
_2592
EX28DRAFT_2593: EX28DRAFT_2593 - Protein of unknown function (DUF2754), at 2,627,818 to 2,628,045
_2593
EX28DRAFT_2594: EX28DRAFT_2594 - Protein of unknown function (DUF2755), at 2,628,295 to 2,628,594
_2594
EX28DRAFT_2595: EX28DRAFT_2595 - Protein of unknown function (DUF1615), at 2,628,591 to 2,629,688
_2595
Position (kb)
2626
2627
2628 Strain fitness (log2 ratio)
-1
0
1 at 2625.774 kb on - strand at 2625.866 kb on + strand at 2625.866 kb on + strand at 2625.867 kb on - strand at 2625.925 kb on + strand at 2625.928 kb on + strand at 2625.928 kb on + strand at 2625.994 kb on - strand at 2625.995 kb on + strand at 2625.995 kb on + strand at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.484 kb on + strand, within EX28DRAFT_2591 at 2626.485 kb on - strand, within EX28DRAFT_2591 at 2626.495 kb on - strand, within EX28DRAFT_2591 at 2626.528 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.540 kb on - strand, within EX28DRAFT_2591 at 2626.541 kb on + strand, within EX28DRAFT_2591 at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.689 kb on - strand at 2626.689 kb on - strand at 2626.727 kb on - strand at 2626.741 kb on + strand at 2626.742 kb on - strand at 2626.852 kb on + strand, within EX28DRAFT_2592 at 2627.369 kb on - strand, within EX28DRAFT_2592 at 2627.389 kb on + strand, within EX28DRAFT_2592 at 2627.393 kb on - strand, within EX28DRAFT_2592 at 2627.393 kb on - strand, within EX28DRAFT_2592 at 2627.466 kb on + strand, within EX28DRAFT_2592 at 2627.467 kb on - strand, within EX28DRAFT_2592 at 2627.467 kb on - strand, within EX28DRAFT_2592 at 2627.487 kb on - strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.560 kb on + strand, within EX28DRAFT_2592 at 2627.690 kb on - strand, within EX28DRAFT_2592 at 2627.924 kb on + strand, within EX28DRAFT_2593 at 2627.925 kb on - strand, within EX28DRAFT_2593 at 2627.925 kb on - strand, within EX28DRAFT_2593 at 2627.925 kb on - strand, within EX28DRAFT_2593 at 2627.973 kb on + strand, within EX28DRAFT_2593 at 2627.979 kb on + strand, within EX28DRAFT_2593 at 2628.005 kb on + strand, within EX28DRAFT_2593 at 2628.005 kb on + strand, within EX28DRAFT_2593 at 2628.008 kb on + strand, within EX28DRAFT_2593 at 2628.141 kb on - strand at 2628.262 kb on + strand at 2628.266 kb on - strand at 2628.278 kb on + strand at 2628.278 kb on + strand at 2628.306 kb on + strand at 2628.306 kb on + strand at 2628.417 kb on + strand, within EX28DRAFT_2594 at 2628.417 kb on + strand, within EX28DRAFT_2594 at 2628.418 kb on - strand, within EX28DRAFT_2594 at 2628.543 kb on + strand, within EX28DRAFT_2594 at 2628.544 kb on - strand, within EX28DRAFT_2594 at 2628.754 kb on + strand, within EX28DRAFT_2595 at 2628.754 kb on + strand, within EX28DRAFT_2595
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,625,774 - +0.2 2,625,866 + -0.1 2,625,866 + -0.6 2,625,867 - +0.3 2,625,925 + -0.0 2,625,928 + -1.1 2,625,928 + -0.1 2,625,994 - -0.3 2,625,995 + +0.0 2,625,995 + -0.4 2,626,482 + EX28DRAFT_2591 0.80 +0.2 2,626,482 + EX28DRAFT_2591 0.80 +0.4 2,626,482 + EX28DRAFT_2591 0.80 -0.7 2,626,482 + EX28DRAFT_2591 0.80 +0.2 2,626,482 + EX28DRAFT_2591 0.80 -0.3 2,626,483 - EX28DRAFT_2591 0.80 -0.1 2,626,483 - EX28DRAFT_2591 0.80 +0.7 2,626,483 - EX28DRAFT_2591 0.80 +0.5 2,626,483 - EX28DRAFT_2591 0.80 -0.4 2,626,484 + EX28DRAFT_2591 0.80 +0.4 2,626,485 - EX28DRAFT_2591 0.81 +0.3 2,626,495 - EX28DRAFT_2591 0.82 +0.8 2,626,528 - EX28DRAFT_2591 0.87 -0.4 2,626,539 - EX28DRAFT_2591 0.88 -0.2 2,626,539 - EX28DRAFT_2591 0.88 +0.3 2,626,540 - EX28DRAFT_2591 0.89 +0.8 2,626,541 + EX28DRAFT_2591 0.89 +0.1 2,626,683 + +0.6 2,626,683 + +0.1 2,626,683 + -0.1 2,626,684 - +0.3 2,626,684 - -0.3 2,626,684 - -0.1 2,626,689 - -0.1 2,626,689 - +0.9 2,626,727 - -1.0 2,626,741 + +0.6 2,626,742 - -1.0 2,626,852 + EX28DRAFT_2592 0.12 +0.2 2,627,369 - EX28DRAFT_2592 0.59 +0.4 2,627,389 + EX28DRAFT_2592 0.61 +0.6 2,627,393 - EX28DRAFT_2592 0.61 +0.7 2,627,393 - EX28DRAFT_2592 0.61 +0.2 2,627,466 + EX28DRAFT_2592 0.68 -0.0 2,627,467 - EX28DRAFT_2592 0.68 -1.0 2,627,467 - EX28DRAFT_2592 0.68 -0.2 2,627,487 - EX28DRAFT_2592 0.70 +0.1 2,627,498 + EX28DRAFT_2592 0.71 +1.2 2,627,498 + EX28DRAFT_2592 0.71 +0.1 2,627,498 + EX28DRAFT_2592 0.71 -0.1 2,627,499 - EX28DRAFT_2592 0.71 +0.6 2,627,499 - EX28DRAFT_2592 0.71 -0.3 2,627,499 - EX28DRAFT_2592 0.71 -0.2 2,627,560 + EX28DRAFT_2592 0.76 -0.0 2,627,690 - EX28DRAFT_2592 0.88 -0.3 2,627,924 + EX28DRAFT_2593 0.46 -0.3 2,627,925 - EX28DRAFT_2593 0.47 +0.3 2,627,925 - EX28DRAFT_2593 0.47 +0.7 2,627,925 - EX28DRAFT_2593 0.47 +0.2 2,627,973 + EX28DRAFT_2593 0.68 -0.2 2,627,979 + EX28DRAFT_2593 0.71 +1.1 2,628,005 + EX28DRAFT_2593 0.82 -0.3 2,628,005 + EX28DRAFT_2593 0.82 +0.2 2,628,008 + EX28DRAFT_2593 0.83 -0.1 2,628,141 - -0.7 2,628,262 + +0.4 2,628,266 - -0.1 2,628,278 + -0.2 2,628,278 + -0.2 2,628,306 + -0.5 2,628,306 + -0.1 2,628,417 + EX28DRAFT_2594 0.41 +0.4 2,628,417 + EX28DRAFT_2594 0.41 +0.2 2,628,418 - EX28DRAFT_2594 0.41 -0.2 2,628,543 + EX28DRAFT_2594 0.83 +0.2 2,628,544 - EX28DRAFT_2594 0.83 -0.2 2,628,754 + EX28DRAFT_2595 0.15 -0.0 2,628,754 + EX28DRAFT_2595 0.15 -0.1
Or see this region's nucleotide sequence