Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2588

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2586 and EX28DRAFT_2587 are separated by 102 nucleotidesEX28DRAFT_2587 and EX28DRAFT_2588 are separated by 89 nucleotidesEX28DRAFT_2588 and EX28DRAFT_2589 are separated by 99 nucleotidesEX28DRAFT_2589 and EX28DRAFT_2590 are separated by 210 nucleotides EX28DRAFT_2586: EX28DRAFT_2586 - diguanylate cyclase (GGDEF) domain, at 2,620,949 to 2,622,052 _2586 EX28DRAFT_2587: EX28DRAFT_2587 - psiF repeat, at 2,622,155 to 2,622,475 _2587 EX28DRAFT_2588: EX28DRAFT_2588 - Alkaline phosphatase, at 2,622,565 to 2,623,980 _2588 EX28DRAFT_2589: EX28DRAFT_2589 - Sigma-S stabilisation anti-adaptor protein, at 2,624,080 to 2,624,340 _2589 EX28DRAFT_2590: EX28DRAFT_2590 - Arabinose efflux permease, at 2,624,551 to 2,625,765 _2590 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -1 0 1 2at 2621.850 kb on - strand, within EX28DRAFT_2586at 2622.030 kb on + strandat 2622.030 kb on + strandat 2622.031 kb on - strandat 2622.031 kb on - strandat 2622.031 kb on - strandat 2622.034 kb on - strandat 2622.085 kb on + strandat 2622.086 kb on - strandat 2622.111 kb on + strandat 2622.235 kb on + strand, within EX28DRAFT_2587at 2622.302 kb on - strand, within EX28DRAFT_2587at 2622.318 kb on + strand, within EX28DRAFT_2587at 2622.318 kb on + strand, within EX28DRAFT_2587at 2622.319 kb on - strand, within EX28DRAFT_2587at 2622.368 kb on - strand, within EX28DRAFT_2587at 2622.379 kb on + strand, within EX28DRAFT_2587at 2622.379 kb on + strand, within EX28DRAFT_2587at 2622.380 kb on - strand, within EX28DRAFT_2587at 2622.380 kb on - strand, within EX28DRAFT_2587at 2622.462 kb on - strandat 2622.571 kb on - strandat 2622.571 kb on - strandat 2622.596 kb on + strandat 2622.711 kb on - strand, within EX28DRAFT_2588at 2622.741 kb on + strand, within EX28DRAFT_2588at 2622.775 kb on - strand, within EX28DRAFT_2588at 2622.775 kb on - strand, within EX28DRAFT_2588at 2622.775 kb on - strand, within EX28DRAFT_2588at 2622.953 kb on - strand, within EX28DRAFT_2588at 2623.056 kb on + strand, within EX28DRAFT_2588at 2623.057 kb on - strand, within EX28DRAFT_2588at 2623.075 kb on - strand, within EX28DRAFT_2588at 2623.092 kb on - strand, within EX28DRAFT_2588at 2623.409 kb on + strand, within EX28DRAFT_2588at 2623.416 kb on + strand, within EX28DRAFT_2588at 2623.663 kb on - strand, within EX28DRAFT_2588at 2623.664 kb on + strand, within EX28DRAFT_2588at 2623.665 kb on - strand, within EX28DRAFT_2588at 2623.922 kb on + strandat 2623.996 kb on + strandat 2624.003 kb on - strandat 2624.003 kb on - strandat 2624.007 kb on - strandat 2624.027 kb on + strandat 2624.029 kb on + strandat 2624.029 kb on + strandat 2624.030 kb on - strandat 2624.030 kb on - strandat 2624.030 kb on - strandat 2624.052 kb on - strandat 2624.065 kb on - strandat 2624.111 kb on - strand, within EX28DRAFT_2589at 2624.501 kb on + strandat 2624.505 kb on + strandat 2624.506 kb on - strandat 2624.616 kb on + strandat 2624.650 kb on + strandat 2624.718 kb on - strand, within EX28DRAFT_2590at 2624.718 kb on - strand, within EX28DRAFT_2590at 2624.721 kb on + strand, within EX28DRAFT_2590at 2624.721 kb on + strand, within EX28DRAFT_2590at 2624.721 kb on + strand, within EX28DRAFT_2590at 2624.722 kb on - strand, within EX28DRAFT_2590at 2624.733 kb on + strand, within EX28DRAFT_2590at 2624.733 kb on + strand, within EX28DRAFT_2590at 2624.733 kb on + strand, within EX28DRAFT_2590at 2624.736 kb on - strand, within EX28DRAFT_2590at 2624.746 kb on - strand, within EX28DRAFT_2590at 2624.771 kb on + strand, within EX28DRAFT_2590

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,621,850 - EX28DRAFT_2586 0.82 -0.3
2,622,030 + +0.1
2,622,030 + -0.5
2,622,031 - +0.2
2,622,031 - +0.3
2,622,031 - +0.2
2,622,034 - +0.7
2,622,085 + +0.2
2,622,086 - +0.7
2,622,111 + -0.9
2,622,235 + EX28DRAFT_2587 0.25 -0.1
2,622,302 - EX28DRAFT_2587 0.46 +0.1
2,622,318 + EX28DRAFT_2587 0.51 +0.2
2,622,318 + EX28DRAFT_2587 0.51 -0.2
2,622,319 - EX28DRAFT_2587 0.51 -1.6
2,622,368 - EX28DRAFT_2587 0.66 -0.5
2,622,379 + EX28DRAFT_2587 0.70 +0.2
2,622,379 + EX28DRAFT_2587 0.70 +0.2
2,622,380 - EX28DRAFT_2587 0.70 +0.7
2,622,380 - EX28DRAFT_2587 0.70 +1.6
2,622,462 - -0.5
2,622,571 - +0.8
2,622,571 - +0.2
2,622,596 + +0.6
2,622,711 - EX28DRAFT_2588 0.10 -0.1
2,622,741 + EX28DRAFT_2588 0.12 -0.0
2,622,775 - EX28DRAFT_2588 0.15 +0.4
2,622,775 - EX28DRAFT_2588 0.15 +1.0
2,622,775 - EX28DRAFT_2588 0.15 +1.2
2,622,953 - EX28DRAFT_2588 0.27 +0.1
2,623,056 + EX28DRAFT_2588 0.35 +0.5
2,623,057 - EX28DRAFT_2588 0.35 +0.5
2,623,075 - EX28DRAFT_2588 0.36 +0.8
2,623,092 - EX28DRAFT_2588 0.37 -0.4
2,623,409 + EX28DRAFT_2588 0.60 +0.4
2,623,416 + EX28DRAFT_2588 0.60 -1.0
2,623,663 - EX28DRAFT_2588 0.78 -0.3
2,623,664 + EX28DRAFT_2588 0.78 +0.4
2,623,665 - EX28DRAFT_2588 0.78 -0.2
2,623,922 + +1.4
2,623,996 + -0.5
2,624,003 - +0.0
2,624,003 - -0.0
2,624,007 - +2.0
2,624,027 + +2.0
2,624,029 + -1.1
2,624,029 + -0.3
2,624,030 - -0.2
2,624,030 - -1.0
2,624,030 - -0.1
2,624,052 - -0.0
2,624,065 - -0.4
2,624,111 - EX28DRAFT_2589 0.12 -1.1
2,624,501 + -0.2
2,624,505 + +0.4
2,624,506 - +0.0
2,624,616 + -0.4
2,624,650 + +0.2
2,624,718 - EX28DRAFT_2590 0.14 -1.4
2,624,718 - EX28DRAFT_2590 0.14 +1.8
2,624,721 + EX28DRAFT_2590 0.14 +0.1
2,624,721 + EX28DRAFT_2590 0.14 -0.0
2,624,721 + EX28DRAFT_2590 0.14 +0.4
2,624,722 - EX28DRAFT_2590 0.14 +0.0
2,624,733 + EX28DRAFT_2590 0.15 -0.8
2,624,733 + EX28DRAFT_2590 0.15 -0.2
2,624,733 + EX28DRAFT_2590 0.15 +0.5
2,624,736 - EX28DRAFT_2590 0.15 +0.1
2,624,746 - EX28DRAFT_2590 0.16 +0.1
2,624,771 + EX28DRAFT_2590 0.18 +0.2

Or see this region's nucleotide sequence