Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2470 and EX28DRAFT_2471 are separated by 44 nucleotides EX28DRAFT_2471 and EX28DRAFT_2472 overlap by 4 nucleotides EX28DRAFT_2472 and EX28DRAFT_2473 overlap by 4 nucleotides EX28DRAFT_2473 and EX28DRAFT_2474 are separated by 108 nucleotides
EX28DRAFT_2470: EX28DRAFT_2470 - hypothetical protein, at 2,499,353 to 2,500,204
_2470
EX28DRAFT_2471: EX28DRAFT_2471 - Membrane protease subunits, stomatin/prohibitin homologs, at 2,500,249 to 2,501,163
_2471
EX28DRAFT_2472: EX28DRAFT_2472 - Membrane protein implicated in regulation of membrane protease activity, at 2,501,160 to 2,501,612
_2472
EX28DRAFT_2473: EX28DRAFT_2473 - Cu(I)-responsive transcriptional regulator, at 2,501,609 to 2,502,019
_2473
EX28DRAFT_2474: EX28DRAFT_2474 - copper-(or silver)-translocating P-type ATPase, at 2,502,128 to 2,504,626
_2474
Position (kb)
2500
2501
2502 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2499.252 kb on + strand at 2499.337 kb on - strand at 2499.345 kb on + strand at 2499.346 kb on - strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.362 kb on - strand at 2499.415 kb on - strand at 2499.653 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.702 kb on + strand, within EX28DRAFT_2470 at 2499.702 kb on + strand, within EX28DRAFT_2470 at 2499.740 kb on - strand, within EX28DRAFT_2470 at 2499.817 kb on + strand, within EX28DRAFT_2470 at 2499.817 kb on + strand, within EX28DRAFT_2470 at 2499.974 kb on - strand, within EX28DRAFT_2470 at 2499.978 kb on + strand, within EX28DRAFT_2470 at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.125 kb on - strand at 2500.125 kb on - strand at 2500.183 kb on + strand at 2500.184 kb on - strand at 2500.188 kb on - strand at 2500.193 kb on + strand at 2500.193 kb on + strand at 2500.194 kb on - strand at 2500.249 kb on - strand at 2500.290 kb on + strand at 2500.543 kb on + strand, within EX28DRAFT_2471 at 2500.544 kb on - strand, within EX28DRAFT_2471 at 2500.672 kb on - strand, within EX28DRAFT_2471 at 2500.672 kb on - strand, within EX28DRAFT_2471 at 2500.908 kb on - strand, within EX28DRAFT_2471 at 2501.005 kb on + strand, within EX28DRAFT_2471 at 2501.006 kb on - strand, within EX28DRAFT_2471 at 2501.006 kb on - strand, within EX28DRAFT_2471 at 2501.025 kb on + strand, within EX28DRAFT_2471 at 2501.462 kb on + strand, within EX28DRAFT_2472 at 2501.890 kb on + strand, within EX28DRAFT_2473 at 2501.961 kb on + strand, within EX28DRAFT_2473 at 2502.014 kb on - strand at 2502.063 kb on + strand at 2502.064 kb on - strand at 2502.097 kb on - strand at 2502.097 kb on - strand at 2502.113 kb on + strand at 2502.114 kb on - strand at 2502.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,499,252 + -0.4 2,499,337 - +0.6 2,499,345 + +0.4 2,499,346 - -0.2 2,499,361 + -0.3 2,499,361 + +0.5 2,499,361 + +0.0 2,499,362 - -0.5 2,499,415 - +0.0 2,499,653 - EX28DRAFT_2470 0.35 -0.4 2,499,676 - EX28DRAFT_2470 0.38 +0.6 2,499,676 - EX28DRAFT_2470 0.38 +1.4 2,499,676 - EX28DRAFT_2470 0.38 -0.4 2,499,676 - EX28DRAFT_2470 0.38 +0.7 2,499,676 - EX28DRAFT_2470 0.38 +0.5 2,499,702 + EX28DRAFT_2470 0.41 +0.9 2,499,702 + EX28DRAFT_2470 0.41 +0.1 2,499,740 - EX28DRAFT_2470 0.45 +0.4 2,499,817 + EX28DRAFT_2470 0.54 -0.3 2,499,817 + EX28DRAFT_2470 0.54 -1.3 2,499,974 - EX28DRAFT_2470 0.73 +0.4 2,499,978 + EX28DRAFT_2470 0.73 +1.1 2,500,124 + -0.6 2,500,124 + -0.1 2,500,124 + -0.2 2,500,124 + +0.1 2,500,125 - +0.0 2,500,125 - +0.1 2,500,183 + +0.7 2,500,184 - -0.2 2,500,188 - -0.6 2,500,193 + -0.5 2,500,193 + -0.1 2,500,194 - +0.3 2,500,249 - +0.8 2,500,290 + -0.3 2,500,543 + EX28DRAFT_2471 0.32 -0.6 2,500,544 - EX28DRAFT_2471 0.32 +2.2 2,500,672 - EX28DRAFT_2471 0.46 -0.1 2,500,672 - EX28DRAFT_2471 0.46 +1.0 2,500,908 - EX28DRAFT_2471 0.72 +0.2 2,501,005 + EX28DRAFT_2471 0.83 +0.6 2,501,006 - EX28DRAFT_2471 0.83 -0.9 2,501,006 - EX28DRAFT_2471 0.83 +1.8 2,501,025 + EX28DRAFT_2471 0.85 +0.2 2,501,462 + EX28DRAFT_2472 0.67 -0.2 2,501,890 + EX28DRAFT_2473 0.68 +0.4 2,501,961 + EX28DRAFT_2473 0.86 -0.0 2,502,014 - +0.5 2,502,063 + -0.1 2,502,064 - -0.0 2,502,097 - -0.6 2,502,097 - -2.5 2,502,113 + -0.3 2,502,114 - -0.5 2,502,139 + -3.1
Or see this region's nucleotide sequence