Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2441 and EX28DRAFT_2442 are separated by 800 nucleotides EX28DRAFT_2442 and EX28DRAFT_2443 are separated by 51 nucleotides EX28DRAFT_2443 and EX28DRAFT_2444 are separated by 9 nucleotides
EX28DRAFT_2441: EX28DRAFT_2441 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,471,440 to 2,472,168
_2441
EX28DRAFT_2442: EX28DRAFT_2442 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,472,969 to 2,473,601
_2442
EX28DRAFT_2443: EX28DRAFT_2443 - P pilus assembly protein, pilin FimA, at 2,473,653 to 2,474,174
_2443
EX28DRAFT_2444: EX28DRAFT_2444 - P pilus assembly protein, pilin FimA, at 2,474,184 to 2,475,191
_2444
Position (kb)
2472
2473
2474 Strain fitness (log2 ratio)
-2
-1
0
1 at 2472.033 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.061 kb on - strand, within EX28DRAFT_2441 at 2472.064 kb on + strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.098 kb on + strand at 2472.175 kb on - strand at 2472.175 kb on - strand at 2472.252 kb on - strand at 2472.254 kb on - strand at 2472.257 kb on + strand at 2472.331 kb on + strand at 2472.363 kb on - strand at 2472.386 kb on - strand at 2472.404 kb on + strand at 2472.405 kb on - strand at 2472.601 kb on + strand at 2472.710 kb on - strand at 2472.744 kb on - strand at 2472.748 kb on + strand at 2472.748 kb on + strand at 2472.749 kb on - strand at 2472.771 kb on - strand at 2472.823 kb on + strand at 2472.823 kb on + strand at 2472.824 kb on - strand at 2472.840 kb on + strand at 2472.873 kb on + strand at 2472.873 kb on + strand at 2472.876 kb on + strand at 2472.876 kb on + strand at 2472.877 kb on - strand at 2472.881 kb on + strand at 2472.899 kb on - strand at 2472.949 kb on - strand at 2472.992 kb on + strand at 2473.046 kb on + strand, within EX28DRAFT_2442 at 2473.052 kb on + strand, within EX28DRAFT_2442 at 2473.169 kb on - strand, within EX28DRAFT_2442 at 2473.171 kb on + strand, within EX28DRAFT_2442 at 2473.223 kb on + strand, within EX28DRAFT_2442 at 2473.308 kb on + strand, within EX28DRAFT_2442 at 2473.308 kb on + strand, within EX28DRAFT_2442 at 2473.371 kb on - strand, within EX28DRAFT_2442 at 2473.493 kb on - strand, within EX28DRAFT_2442 at 2473.534 kb on - strand, within EX28DRAFT_2442 at 2473.597 kb on + strand at 2473.598 kb on - strand at 2473.624 kb on + strand at 2473.625 kb on - strand at 2473.654 kb on + strand at 2473.661 kb on - strand at 2473.726 kb on + strand, within EX28DRAFT_2443 at 2473.727 kb on - strand, within EX28DRAFT_2443 at 2473.961 kb on + strand, within EX28DRAFT_2443 at 2473.962 kb on - strand, within EX28DRAFT_2443 at 2474.057 kb on + strand, within EX28DRAFT_2443 at 2474.078 kb on - strand, within EX28DRAFT_2443 at 2474.153 kb on + strand at 2474.153 kb on + strand at 2474.174 kb on + strand at 2474.241 kb on - strand at 2474.406 kb on - strand, within EX28DRAFT_2444
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,472,033 + EX28DRAFT_2441 0.81 -0.0 2,472,060 + EX28DRAFT_2441 0.85 -0.1 2,472,060 + EX28DRAFT_2441 0.85 -0.2 2,472,060 + EX28DRAFT_2441 0.85 +0.5 2,472,061 - EX28DRAFT_2441 0.85 +0.1 2,472,064 + EX28DRAFT_2441 0.86 +0.4 2,472,065 - EX28DRAFT_2441 0.86 +0.9 2,472,065 - EX28DRAFT_2441 0.86 +0.4 2,472,098 + +0.4 2,472,175 - +0.7 2,472,175 - -0.6 2,472,252 - +1.0 2,472,254 - +0.0 2,472,257 + +0.4 2,472,331 + +0.2 2,472,363 - +0.8 2,472,386 - +0.4 2,472,404 + +0.7 2,472,405 - +1.3 2,472,601 + -0.3 2,472,710 - -2.7 2,472,744 - +0.2 2,472,748 + -0.6 2,472,748 + -0.9 2,472,749 - -0.5 2,472,771 - +0.7 2,472,823 + -1.8 2,472,823 + -0.0 2,472,824 - +0.5 2,472,840 + -0.8 2,472,873 + -0.2 2,472,873 + -0.6 2,472,876 + +0.5 2,472,876 + -0.3 2,472,877 - +0.5 2,472,881 + -0.4 2,472,899 - +0.3 2,472,949 - +0.1 2,472,992 + -0.1 2,473,046 + EX28DRAFT_2442 0.12 +0.7 2,473,052 + EX28DRAFT_2442 0.13 +0.0 2,473,169 - EX28DRAFT_2442 0.32 +1.0 2,473,171 + EX28DRAFT_2442 0.32 +0.4 2,473,223 + EX28DRAFT_2442 0.40 +0.8 2,473,308 + EX28DRAFT_2442 0.54 +1.4 2,473,308 + EX28DRAFT_2442 0.54 +0.8 2,473,371 - EX28DRAFT_2442 0.64 -0.3 2,473,493 - EX28DRAFT_2442 0.83 +0.3 2,473,534 - EX28DRAFT_2442 0.89 +0.4 2,473,597 + +1.3 2,473,598 - -1.6 2,473,624 + +0.4 2,473,625 - +0.0 2,473,654 + -0.0 2,473,661 - -0.4 2,473,726 + EX28DRAFT_2443 0.14 +0.5 2,473,727 - EX28DRAFT_2443 0.14 -0.1 2,473,961 + EX28DRAFT_2443 0.59 +0.2 2,473,962 - EX28DRAFT_2443 0.59 +0.3 2,474,057 + EX28DRAFT_2443 0.77 -0.2 2,474,078 - EX28DRAFT_2443 0.81 -1.5 2,474,153 + +1.0 2,474,153 + +0.1 2,474,174 + +0.0 2,474,241 - -1.4 2,474,406 - EX28DRAFT_2444 0.22 +0.1
Or see this region's nucleotide sequence