Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2436

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2435 and EX28DRAFT_2436 are separated by 1 nucleotidesEX28DRAFT_2436 and EX28DRAFT_2437 are separated by 24 nucleotides EX28DRAFT_2435: EX28DRAFT_2435 - ABC-type spermidine/putrescine transport systems, ATPase components, at 2,465,426 to 2,466,457 _2435 EX28DRAFT_2436: EX28DRAFT_2436 - ABC-type Fe3+ transport system, permease component, at 2,466,459 to 2,468,033 _2436 EX28DRAFT_2437: EX28DRAFT_2437 - ABC-type Fe3+ transport system, periplasmic component, at 2,468,058 to 2,469,074 _2437 Position (kb) 2466 2467 2468 2469Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2465.504 kb on + strandat 2465.630 kb on + strand, within EX28DRAFT_2435at 2465.631 kb on - strand, within EX28DRAFT_2435at 2465.794 kb on - strand, within EX28DRAFT_2435at 2465.802 kb on + strand, within EX28DRAFT_2435at 2465.802 kb on + strand, within EX28DRAFT_2435at 2466.322 kb on + strand, within EX28DRAFT_2435at 2466.489 kb on - strandat 2466.490 kb on + strandat 2466.490 kb on + strandat 2466.556 kb on + strandat 2466.556 kb on + strandat 2466.557 kb on - strandat 2466.557 kb on - strandat 2466.819 kb on - strand, within EX28DRAFT_2436at 2466.832 kb on + strand, within EX28DRAFT_2436at 2466.848 kb on + strand, within EX28DRAFT_2436at 2466.848 kb on + strand, within EX28DRAFT_2436at 2466.863 kb on - strand, within EX28DRAFT_2436at 2466.940 kb on + strand, within EX28DRAFT_2436at 2466.940 kb on + strand, within EX28DRAFT_2436at 2466.940 kb on + strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2467.134 kb on + strand, within EX28DRAFT_2436at 2467.290 kb on + strand, within EX28DRAFT_2436at 2467.290 kb on + strand, within EX28DRAFT_2436at 2467.356 kb on - strand, within EX28DRAFT_2436at 2467.420 kb on + strand, within EX28DRAFT_2436at 2467.588 kb on + strand, within EX28DRAFT_2436at 2467.588 kb on + strand, within EX28DRAFT_2436at 2467.588 kb on + strand, within EX28DRAFT_2436at 2467.588 kb on + strand, within EX28DRAFT_2436at 2467.589 kb on - strand, within EX28DRAFT_2436at 2467.589 kb on - strand, within EX28DRAFT_2436at 2467.589 kb on - strand, within EX28DRAFT_2436at 2467.600 kb on + strand, within EX28DRAFT_2436at 2467.604 kb on - strand, within EX28DRAFT_2436at 2467.672 kb on + strand, within EX28DRAFT_2436at 2467.672 kb on + strand, within EX28DRAFT_2436at 2467.673 kb on - strand, within EX28DRAFT_2436at 2467.787 kb on + strand, within EX28DRAFT_2436at 2467.869 kb on - strand, within EX28DRAFT_2436at 2467.932 kb on + strandat 2467.950 kb on + strandat 2468.033 kb on + strandat 2468.033 kb on + strandat 2468.034 kb on - strandat 2468.034 kb on - strandat 2468.034 kb on - strandat 2468.034 kb on - strandat 2468.034 kb on - strandat 2468.034 kb on - strandat 2468.048 kb on - strandat 2468.100 kb on - strandat 2468.246 kb on - strand, within EX28DRAFT_2437at 2468.246 kb on - strand, within EX28DRAFT_2437at 2468.344 kb on + strand, within EX28DRAFT_2437at 2468.344 kb on + strand, within EX28DRAFT_2437at 2468.344 kb on + strand, within EX28DRAFT_2437at 2468.348 kb on - strand, within EX28DRAFT_2437at 2468.401 kb on + strand, within EX28DRAFT_2437at 2468.404 kb on + strand, within EX28DRAFT_2437at 2468.404 kb on + strand, within EX28DRAFT_2437at 2468.410 kb on + strand, within EX28DRAFT_2437at 2468.473 kb on + strand, within EX28DRAFT_2437at 2468.474 kb on - strand, within EX28DRAFT_2437at 2468.474 kb on - strand, within EX28DRAFT_2437at 2468.634 kb on - strand, within EX28DRAFT_2437at 2468.668 kb on + strand, within EX28DRAFT_2437at 2468.676 kb on + strand, within EX28DRAFT_2437at 2468.676 kb on + strand, within EX28DRAFT_2437at 2468.677 kb on - strand, within EX28DRAFT_2437at 2468.725 kb on + strand, within EX28DRAFT_2437at 2468.968 kb on + strand, within EX28DRAFT_2437at 2468.968 kb on + strand, within EX28DRAFT_2437at 2468.969 kb on - strand, within EX28DRAFT_2437at 2469.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,465,504 + +0.0
2,465,630 + EX28DRAFT_2435 0.20 -0.0
2,465,631 - EX28DRAFT_2435 0.20 -0.1
2,465,794 - EX28DRAFT_2435 0.36 -0.5
2,465,802 + EX28DRAFT_2435 0.36 -0.2
2,465,802 + EX28DRAFT_2435 0.36 -0.2
2,466,322 + EX28DRAFT_2435 0.87 +0.1
2,466,489 - +0.5
2,466,490 + +0.6
2,466,490 + -0.0
2,466,556 + +0.5
2,466,556 + -0.5
2,466,557 - +0.8
2,466,557 - +0.3
2,466,819 - EX28DRAFT_2436 0.23 -0.5
2,466,832 + EX28DRAFT_2436 0.24 +0.2
2,466,848 + EX28DRAFT_2436 0.25 -0.3
2,466,848 + EX28DRAFT_2436 0.25 -0.4
2,466,863 - EX28DRAFT_2436 0.26 +0.7
2,466,940 + EX28DRAFT_2436 0.31 -0.6
2,466,940 + EX28DRAFT_2436 0.31 +0.3
2,466,940 + EX28DRAFT_2436 0.31 -0.3
2,466,941 - EX28DRAFT_2436 0.31 -0.6
2,466,941 - EX28DRAFT_2436 0.31 +0.2
2,466,941 - EX28DRAFT_2436 0.31 -0.5
2,466,941 - EX28DRAFT_2436 0.31 -0.2
2,466,941 - EX28DRAFT_2436 0.31 -0.1
2,466,941 - EX28DRAFT_2436 0.31 -0.3
2,466,941 - EX28DRAFT_2436 0.31 -0.7
2,467,134 + EX28DRAFT_2436 0.43 +0.6
2,467,290 + EX28DRAFT_2436 0.53 -0.5
2,467,290 + EX28DRAFT_2436 0.53 +0.2
2,467,356 - EX28DRAFT_2436 0.57 -0.2
2,467,420 + EX28DRAFT_2436 0.61 -0.2
2,467,588 + EX28DRAFT_2436 0.72 -0.3
2,467,588 + EX28DRAFT_2436 0.72 +0.8
2,467,588 + EX28DRAFT_2436 0.72 +1.1
2,467,588 + EX28DRAFT_2436 0.72 -0.2
2,467,589 - EX28DRAFT_2436 0.72 -0.9
2,467,589 - EX28DRAFT_2436 0.72 +0.1
2,467,589 - EX28DRAFT_2436 0.72 -0.4
2,467,600 + EX28DRAFT_2436 0.72 +0.0
2,467,604 - EX28DRAFT_2436 0.73 +0.1
2,467,672 + EX28DRAFT_2436 0.77 -0.2
2,467,672 + EX28DRAFT_2436 0.77 -0.0
2,467,673 - EX28DRAFT_2436 0.77 -0.1
2,467,787 + EX28DRAFT_2436 0.84 +0.6
2,467,869 - EX28DRAFT_2436 0.90 -0.0
2,467,932 + -1.5
2,467,950 + -0.9
2,468,033 + -0.5
2,468,033 + +0.1
2,468,034 - -0.1
2,468,034 - -0.3
2,468,034 - -0.6
2,468,034 - +0.4
2,468,034 - +2.8
2,468,034 - -0.9
2,468,048 - +0.8
2,468,100 - +0.3
2,468,246 - EX28DRAFT_2437 0.18 -0.4
2,468,246 - EX28DRAFT_2437 0.18 +0.6
2,468,344 + EX28DRAFT_2437 0.28 -0.9
2,468,344 + EX28DRAFT_2437 0.28 -1.0
2,468,344 + EX28DRAFT_2437 0.28 -0.6
2,468,348 - EX28DRAFT_2437 0.29 -0.8
2,468,401 + EX28DRAFT_2437 0.34 -1.0
2,468,404 + EX28DRAFT_2437 0.34 -0.7
2,468,404 + EX28DRAFT_2437 0.34 +0.0
2,468,410 + EX28DRAFT_2437 0.35 +0.4
2,468,473 + EX28DRAFT_2437 0.41 +0.7
2,468,474 - EX28DRAFT_2437 0.41 +0.2
2,468,474 - EX28DRAFT_2437 0.41 -0.3
2,468,634 - EX28DRAFT_2437 0.57 +0.7
2,468,668 + EX28DRAFT_2437 0.60 -2.2
2,468,676 + EX28DRAFT_2437 0.61 -0.2
2,468,676 + EX28DRAFT_2437 0.61 -1.4
2,468,677 - EX28DRAFT_2437 0.61 +0.2
2,468,725 + EX28DRAFT_2437 0.66 +0.2
2,468,968 + EX28DRAFT_2437 0.89 +1.1
2,468,968 + EX28DRAFT_2437 0.89 -0.1
2,468,969 - EX28DRAFT_2437 0.90 -0.0
2,469,012 - +0.1

Or see this region's nucleotide sequence