Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2315 and EX28DRAFT_2316 overlap by 5 nucleotides EX28DRAFT_2316 and EX28DRAFT_2317 are separated by 5 nucleotides EX28DRAFT_2317 and EX28DRAFT_2318 overlap by 1 nucleotides EX28DRAFT_2318 and EX28DRAFT_2319 overlap by 1 nucleotides EX28DRAFT_2319 and EX28DRAFT_2320 are separated by 120 nucleotides
EX28DRAFT_2315: EX28DRAFT_2315 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,341,069 to 2,341,974
_2315
EX28DRAFT_2316: EX28DRAFT_2316 - RNA, at 2,341,970 to 2,342,124
_2316
EX28DRAFT_2317: EX28DRAFT_2317 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 2,342,130 to 2,342,870
_2317
EX28DRAFT_2318: EX28DRAFT_2318 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 2,342,870 to 2,343,544
_2318
EX28DRAFT_2319: EX28DRAFT_2319 - ABC-type polar amino acid transport system, ATPase component, at 2,343,544 to 2,344,269
_2319
EX28DRAFT_2320: EX28DRAFT_2320 - Inosine-uridine nucleoside N-ribohydrolase, at 2,344,390 to 2,345,331
_2320
Position (kb)
2342
2343
2344 Strain fitness (log2 ratio)
-1
0
1
2 at 2341.972 kb on + strand at 2341.973 kb on - strand at 2341.973 kb on - strand at 2341.976 kb on + strand at 2341.976 kb on + strand at 2341.977 kb on - strand at 2341.977 kb on - strand at 2342.033 kb on + strand, within EX28DRAFT_2316 at 2342.033 kb on + strand, within EX28DRAFT_2316 at 2342.034 kb on - strand, within EX28DRAFT_2316 at 2342.035 kb on + strand, within EX28DRAFT_2316 at 2342.126 kb on + strand at 2342.126 kb on + strand at 2342.127 kb on - strand at 2342.129 kb on + strand at 2342.130 kb on - strand at 2342.138 kb on - strand at 2342.138 kb on - strand at 2342.155 kb on + strand at 2342.155 kb on + strand at 2342.190 kb on + strand at 2342.190 kb on + strand at 2342.190 kb on + strand at 2342.191 kb on - strand at 2342.283 kb on - strand, within EX28DRAFT_2317 at 2342.331 kb on + strand, within EX28DRAFT_2317 at 2342.331 kb on + strand, within EX28DRAFT_2317 at 2342.375 kb on + strand, within EX28DRAFT_2317 at 2342.784 kb on + strand, within EX28DRAFT_2317 at 2342.785 kb on - strand, within EX28DRAFT_2317 at 2342.868 kb on + strand at 2342.868 kb on + strand at 2342.869 kb on - strand at 2342.912 kb on + strand at 2342.913 kb on - strand at 2342.935 kb on + strand at 2343.016 kb on + strand, within EX28DRAFT_2318 at 2343.044 kb on + strand, within EX28DRAFT_2318 at 2343.200 kb on + strand, within EX28DRAFT_2318 at 2343.203 kb on + strand, within EX28DRAFT_2318 at 2343.235 kb on + strand, within EX28DRAFT_2318 at 2343.236 kb on - strand, within EX28DRAFT_2318 at 2343.305 kb on - strand, within EX28DRAFT_2318 at 2343.373 kb on + strand, within EX28DRAFT_2318 at 2343.386 kb on + strand, within EX28DRAFT_2318 at 2343.386 kb on + strand, within EX28DRAFT_2318 at 2343.493 kb on + strand at 2343.493 kb on + strand at 2343.540 kb on + strand at 2343.540 kb on + strand at 2343.541 kb on - strand at 2343.543 kb on - strand at 2343.543 kb on - strand at 2343.851 kb on + strand, within EX28DRAFT_2319 at 2343.999 kb on + strand, within EX28DRAFT_2319 at 2343.999 kb on + strand, within EX28DRAFT_2319 at 2344.267 kb on + strand at 2344.374 kb on - strand at 2344.402 kb on - strand at 2344.402 kb on - strand at 2344.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,341,972 + -1.0 2,341,973 - +0.1 2,341,973 - +0.2 2,341,976 + +0.1 2,341,976 + +0.4 2,341,977 - +0.2 2,341,977 - +0.1 2,342,033 + EX28DRAFT_2316 0.41 +0.8 2,342,033 + EX28DRAFT_2316 0.41 -0.8 2,342,034 - EX28DRAFT_2316 0.41 +1.0 2,342,035 + EX28DRAFT_2316 0.42 -0.1 2,342,126 + -1.3 2,342,126 + +0.2 2,342,127 - -0.1 2,342,129 + -0.4 2,342,130 - +0.4 2,342,138 - +0.2 2,342,138 - -0.4 2,342,155 + -0.1 2,342,155 + +0.0 2,342,190 + +0.1 2,342,190 + -0.6 2,342,190 + -0.7 2,342,191 - +0.2 2,342,283 - EX28DRAFT_2317 0.21 -0.2 2,342,331 + EX28DRAFT_2317 0.27 -0.1 2,342,331 + EX28DRAFT_2317 0.27 -0.3 2,342,375 + EX28DRAFT_2317 0.33 +0.3 2,342,784 + EX28DRAFT_2317 0.88 +0.9 2,342,785 - EX28DRAFT_2317 0.88 -1.3 2,342,868 + +0.7 2,342,868 + -0.6 2,342,869 - +0.7 2,342,912 + +0.3 2,342,913 - +1.1 2,342,935 + -1.5 2,343,016 + EX28DRAFT_2318 0.22 -0.3 2,343,044 + EX28DRAFT_2318 0.26 +1.0 2,343,200 + EX28DRAFT_2318 0.49 +1.5 2,343,203 + EX28DRAFT_2318 0.49 -0.0 2,343,235 + EX28DRAFT_2318 0.54 +0.1 2,343,236 - EX28DRAFT_2318 0.54 +2.1 2,343,305 - EX28DRAFT_2318 0.64 +0.3 2,343,373 + EX28DRAFT_2318 0.75 +0.7 2,343,386 + EX28DRAFT_2318 0.76 +0.1 2,343,386 + EX28DRAFT_2318 0.76 -0.4 2,343,493 + -0.0 2,343,493 + -0.5 2,343,540 + +0.6 2,343,540 + +0.2 2,343,541 - +0.4 2,343,543 - +0.8 2,343,543 - +0.1 2,343,851 + EX28DRAFT_2319 0.42 -0.6 2,343,999 + EX28DRAFT_2319 0.63 -0.4 2,343,999 + EX28DRAFT_2319 0.63 -0.4 2,344,267 + +0.9 2,344,374 - -0.0 2,344,402 - +0.1 2,344,402 - +2.3 2,344,404 + -0.2
Or see this region's nucleotide sequence