Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2295 and EX28DRAFT_2296 are separated by 169 nucleotides EX28DRAFT_2296 and EX28DRAFT_2297 are separated by 370 nucleotides
EX28DRAFT_2295: EX28DRAFT_2295 - glutaminyl-tRNA synthetase (EC 6.1.1.18), at 2,322,583 to 2,324,250
_2295
EX28DRAFT_2296: EX28DRAFT_2296 - PTS system, N-acetylglucosamine-specific IIBC component, at 2,324,420 to 2,326,399
_2296
EX28DRAFT_2297: EX28DRAFT_2297 - glucosamine-6-phosphate isomerase, at 2,326,770 to 2,327,570
_2297
Position (kb)
2324
2325
2326
2327 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2324.297 kb on - strand at 2324.297 kb on - strand at 2324.431 kb on + strand at 2324.440 kb on - strand at 2324.528 kb on + strand at 2324.624 kb on - strand, within EX28DRAFT_2296 at 2325.219 kb on - strand, within EX28DRAFT_2296 at 2325.299 kb on - strand, within EX28DRAFT_2296 at 2325.318 kb on + strand, within EX28DRAFT_2296 at 2325.318 kb on + strand, within EX28DRAFT_2296 at 2325.318 kb on + strand, within EX28DRAFT_2296 at 2325.318 kb on + strand, within EX28DRAFT_2296 at 2325.319 kb on - strand, within EX28DRAFT_2296 at 2325.319 kb on - strand, within EX28DRAFT_2296 at 2325.319 kb on - strand, within EX28DRAFT_2296 at 2325.496 kb on - strand, within EX28DRAFT_2296 at 2325.624 kb on + strand, within EX28DRAFT_2296 at 2325.624 kb on + strand, within EX28DRAFT_2296 at 2325.625 kb on - strand, within EX28DRAFT_2296 at 2325.631 kb on - strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.925 kb on - strand, within EX28DRAFT_2296 at 2325.925 kb on - strand, within EX28DRAFT_2296 at 2325.925 kb on - strand, within EX28DRAFT_2296 at 2326.038 kb on + strand, within EX28DRAFT_2296 at 2326.038 kb on + strand, within EX28DRAFT_2296 at 2326.139 kb on - strand, within EX28DRAFT_2296 at 2326.139 kb on - strand, within EX28DRAFT_2296 at 2326.294 kb on + strand at 2326.318 kb on + strand at 2326.318 kb on + strand at 2326.322 kb on - strand at 2326.493 kb on + strand at 2326.511 kb on - strand at 2326.511 kb on - strand at 2326.514 kb on + strand at 2326.628 kb on + strand at 2326.629 kb on - strand at 2326.629 kb on - strand at 2326.629 kb on - strand at 2326.705 kb on - strand at 2326.710 kb on + strand at 2326.710 kb on + strand at 2326.714 kb on + strand at 2326.715 kb on - strand at 2326.747 kb on + strand at 2326.748 kb on - strand at 2326.838 kb on + strand at 2326.937 kb on + strand, within EX28DRAFT_2297 at 2326.989 kb on + strand, within EX28DRAFT_2297 at 2326.989 kb on + strand, within EX28DRAFT_2297 at 2326.990 kb on - strand, within EX28DRAFT_2297 at 2327.022 kb on + strand, within EX28DRAFT_2297 at 2327.023 kb on - strand, within EX28DRAFT_2297 at 2327.023 kb on - strand, within EX28DRAFT_2297 at 2327.034 kb on - strand, within EX28DRAFT_2297 at 2327.131 kb on - strand, within EX28DRAFT_2297 at 2327.182 kb on + strand, within EX28DRAFT_2297 at 2327.183 kb on - strand, within EX28DRAFT_2297 at 2327.319 kb on + strand, within EX28DRAFT_2297
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,324,297 - +0.7 2,324,297 - -0.1 2,324,431 + +0.4 2,324,440 - +0.9 2,324,528 + -0.2 2,324,624 - EX28DRAFT_2296 0.10 +0.6 2,325,219 - EX28DRAFT_2296 0.40 -0.1 2,325,299 - EX28DRAFT_2296 0.44 -0.0 2,325,318 + EX28DRAFT_2296 0.45 -0.4 2,325,318 + EX28DRAFT_2296 0.45 +0.7 2,325,318 + EX28DRAFT_2296 0.45 +0.5 2,325,318 + EX28DRAFT_2296 0.45 -0.5 2,325,319 - EX28DRAFT_2296 0.45 +2.0 2,325,319 - EX28DRAFT_2296 0.45 -0.8 2,325,319 - EX28DRAFT_2296 0.45 -0.0 2,325,496 - EX28DRAFT_2296 0.54 -0.2 2,325,624 + EX28DRAFT_2296 0.61 +0.3 2,325,624 + EX28DRAFT_2296 0.61 +0.5 2,325,625 - EX28DRAFT_2296 0.61 +0.2 2,325,631 - EX28DRAFT_2296 0.61 +0.1 2,325,924 + EX28DRAFT_2296 0.76 +0.1 2,325,924 + EX28DRAFT_2296 0.76 +0.7 2,325,924 + EX28DRAFT_2296 0.76 +1.2 2,325,924 + EX28DRAFT_2296 0.76 +0.2 2,325,924 + EX28DRAFT_2296 0.76 +1.2 2,325,925 - EX28DRAFT_2296 0.76 +1.1 2,325,925 - EX28DRAFT_2296 0.76 +0.3 2,325,925 - EX28DRAFT_2296 0.76 +0.3 2,326,038 + EX28DRAFT_2296 0.82 +2.9 2,326,038 + EX28DRAFT_2296 0.82 -0.6 2,326,139 - EX28DRAFT_2296 0.87 -0.1 2,326,139 - EX28DRAFT_2296 0.87 +0.8 2,326,294 + +0.3 2,326,318 + +0.2 2,326,318 + -0.1 2,326,322 - -0.1 2,326,493 + -0.3 2,326,511 - -0.9 2,326,511 - +1.9 2,326,514 + +0.9 2,326,628 + -1.0 2,326,629 - -0.8 2,326,629 - +0.0 2,326,629 - -0.9 2,326,705 - -0.3 2,326,710 + +0.1 2,326,710 + -0.1 2,326,714 + +0.2 2,326,715 - -2.7 2,326,747 + -0.4 2,326,748 - -0.1 2,326,838 + +0.0 2,326,937 + EX28DRAFT_2297 0.21 +0.7 2,326,989 + EX28DRAFT_2297 0.27 +0.9 2,326,989 + EX28DRAFT_2297 0.27 +0.2 2,326,990 - EX28DRAFT_2297 0.27 -0.4 2,327,022 + EX28DRAFT_2297 0.31 +0.5 2,327,023 - EX28DRAFT_2297 0.32 -0.0 2,327,023 - EX28DRAFT_2297 0.32 -0.9 2,327,034 - EX28DRAFT_2297 0.33 +0.1 2,327,131 - EX28DRAFT_2297 0.45 +0.9 2,327,182 + EX28DRAFT_2297 0.51 -0.2 2,327,183 - EX28DRAFT_2297 0.52 -0.1 2,327,319 + EX28DRAFT_2297 0.69 -0.7
Or see this region's nucleotide sequence