Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2254 and EX28DRAFT_2255 overlap by 4 nucleotides EX28DRAFT_2255 and EX28DRAFT_2256 are separated by 148 nucleotides EX28DRAFT_2256 and EX28DRAFT_2257 overlap by 1 nucleotides EX28DRAFT_2257 and EX28DRAFT_2258 are separated by 14 nucleotides EX28DRAFT_2258 and EX28DRAFT_2259 are separated by 15 nucleotides
EX28DRAFT_2254: EX28DRAFT_2254 - TolQ protein, at 2,274,723 to 2,275,415
_2254
EX28DRAFT_2255: EX28DRAFT_2255 - tol-pal system-associated acyl-CoA thioesterase, at 2,275,412 to 2,275,816
_2255
EX28DRAFT_2256: EX28DRAFT_2256 - cyd operon protein YbgE, at 2,275,965 to 2,276,255
_2256
EX28DRAFT_2257: EX28DRAFT_2257 - cyd operon protein YbgT, at 2,276,255 to 2,276,368
_2257
EX28DRAFT_2258: EX28DRAFT_2258 - cytochrome d oxidase, subunit II (cydB), at 2,276,383 to 2,277,522
_2258
EX28DRAFT_2259: EX28DRAFT_2259 - Cytochrome bd-type quinol oxidase, subunit 1, at 2,277,538 to 2,279,106
_2259
Position (kb)
2276
2277
2278 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2275.464 kb on - strand, within EX28DRAFT_2255 at 2275.682 kb on + strand, within EX28DRAFT_2255 at 2275.735 kb on - strand, within EX28DRAFT_2255 at 2275.735 kb on - strand, within EX28DRAFT_2255 at 2275.780 kb on - strand at 2275.780 kb on - strand at 2275.820 kb on - strand at 2275.867 kb on - strand at 2275.867 kb on - strand at 2275.867 kb on - strand at 2275.867 kb on - strand at 2275.868 kb on + strand at 2275.869 kb on - strand at 2275.963 kb on - strand at 2276.096 kb on + strand, within EX28DRAFT_2256 at 2276.097 kb on - strand, within EX28DRAFT_2256 at 2276.165 kb on + strand, within EX28DRAFT_2256 at 2276.166 kb on - strand, within EX28DRAFT_2256 at 2276.166 kb on - strand, within EX28DRAFT_2256 at 2276.166 kb on - strand, within EX28DRAFT_2256 at 2276.182 kb on - strand, within EX28DRAFT_2256 at 2276.233 kb on + strand at 2276.234 kb on - strand at 2276.381 kb on - strand at 2276.381 kb on - strand at 2276.385 kb on - strand at 2276.388 kb on - strand at 2276.391 kb on + strand at 2276.498 kb on + strand, within EX28DRAFT_2258 at 2276.521 kb on - strand, within EX28DRAFT_2258 at 2276.745 kb on + strand, within EX28DRAFT_2258 at 2278.102 kb on - strand, within EX28DRAFT_2259
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,275,464 - EX28DRAFT_2255 0.13 +0.7 2,275,682 + EX28DRAFT_2255 0.67 -4.1 2,275,735 - EX28DRAFT_2255 0.80 +0.7 2,275,735 - EX28DRAFT_2255 0.80 +1.5 2,275,780 - -0.6 2,275,780 - -0.2 2,275,820 - +0.0 2,275,867 - -0.2 2,275,867 - +0.4 2,275,867 - -0.0 2,275,867 - +0.2 2,275,868 + -4.9 2,275,869 - +0.1 2,275,963 - -1.5 2,276,096 + EX28DRAFT_2256 0.45 -0.5 2,276,097 - EX28DRAFT_2256 0.45 +0.9 2,276,165 + EX28DRAFT_2256 0.69 +0.6 2,276,166 - EX28DRAFT_2256 0.69 -0.6 2,276,166 - EX28DRAFT_2256 0.69 +0.2 2,276,166 - EX28DRAFT_2256 0.69 -1.0 2,276,182 - EX28DRAFT_2256 0.75 -0.6 2,276,233 + +0.4 2,276,234 - +0.9 2,276,381 - +0.6 2,276,381 - +0.5 2,276,385 - -0.2 2,276,388 - -0.1 2,276,391 + +0.0 2,276,498 + EX28DRAFT_2258 0.10 -0.2 2,276,521 - EX28DRAFT_2258 0.12 +1.3 2,276,745 + EX28DRAFT_2258 0.32 -0.4 2,278,102 - EX28DRAFT_2259 0.36 +0.5
Or see this region's nucleotide sequence