Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2187 and EX28DRAFT_2188 are separated by 266 nucleotides EX28DRAFT_2188 and EX28DRAFT_2189 are separated by 68 nucleotides EX28DRAFT_2189 and EX28DRAFT_2190 are separated by 25 nucleotides
EX28DRAFT_2187: EX28DRAFT_2187 - Anthranilate phosphoribosyltransferase, at 2,208,657 to 2,209,619
_2187
EX28DRAFT_2188: EX28DRAFT_2188 - P pilus assembly protein, pilin FimA, at 2,209,886 to 2,210,422
_2188
EX28DRAFT_2189: EX28DRAFT_2189 - P pilus assembly protein, chaperone PapD, at 2,210,491 to 2,211,165
_2189
EX28DRAFT_2190: EX28DRAFT_2190 - P pilus assembly protein, porin PapC, at 2,211,191 to 2,213,734
_2190
Position (kb)
2209
2210
2211 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2208.969 kb on - strand, within EX28DRAFT_2187 at 2209.154 kb on + strand, within EX28DRAFT_2187 at 2209.156 kb on + strand, within EX28DRAFT_2187 at 2209.157 kb on - strand, within EX28DRAFT_2187 at 2209.209 kb on - strand, within EX28DRAFT_2187 at 2209.358 kb on - strand, within EX28DRAFT_2187 at 2209.424 kb on + strand, within EX28DRAFT_2187 at 2209.424 kb on + strand, within EX28DRAFT_2187 at 2209.432 kb on + strand, within EX28DRAFT_2187 at 2209.433 kb on - strand, within EX28DRAFT_2187 at 2209.535 kb on - strand at 2209.652 kb on - strand at 2209.909 kb on - strand at 2209.976 kb on - strand, within EX28DRAFT_2188 at 2210.188 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.278 kb on - strand, within EX28DRAFT_2188 at 2210.299 kb on + strand, within EX28DRAFT_2188 at 2210.299 kb on + strand, within EX28DRAFT_2188 at 2210.405 kb on - strand at 2210.465 kb on - strand at 2210.507 kb on + strand at 2210.631 kb on + strand, within EX28DRAFT_2189 at 2210.805 kb on + strand, within EX28DRAFT_2189 at 2210.844 kb on + strand, within EX28DRAFT_2189 at 2210.952 kb on + strand, within EX28DRAFT_2189 at 2210.986 kb on + strand, within EX28DRAFT_2189 at 2210.987 kb on - strand, within EX28DRAFT_2189 at 2211.054 kb on + strand, within EX28DRAFT_2189 at 2211.055 kb on - strand, within EX28DRAFT_2189 at 2211.171 kb on + strand at 2211.171 kb on + strand at 2211.195 kb on - strand at 2211.195 kb on - strand at 2211.195 kb on - strand at 2211.205 kb on + strand at 2211.206 kb on - strand at 2211.216 kb on + strand at 2211.296 kb on + strand at 2211.297 kb on - strand at 2211.302 kb on - strand at 2211.392 kb on + strand at 2211.393 kb on - strand at 2211.421 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,208,969 - EX28DRAFT_2187 0.32 -0.2 2,209,154 + EX28DRAFT_2187 0.52 -0.1 2,209,156 + EX28DRAFT_2187 0.52 -0.2 2,209,157 - EX28DRAFT_2187 0.52 +0.0 2,209,209 - EX28DRAFT_2187 0.57 +0.3 2,209,358 - EX28DRAFT_2187 0.73 -0.6 2,209,424 + EX28DRAFT_2187 0.80 -0.1 2,209,424 + EX28DRAFT_2187 0.80 -0.1 2,209,432 + EX28DRAFT_2187 0.80 -0.3 2,209,433 - EX28DRAFT_2187 0.81 -0.9 2,209,535 - +0.2 2,209,652 - -0.3 2,209,909 - +0.5 2,209,976 - EX28DRAFT_2188 0.17 -0.2 2,210,188 + EX28DRAFT_2188 0.56 +1.2 2,210,277 + EX28DRAFT_2188 0.73 +0.1 2,210,277 + EX28DRAFT_2188 0.73 -0.3 2,210,277 + EX28DRAFT_2188 0.73 +1.4 2,210,278 - EX28DRAFT_2188 0.73 -0.6 2,210,299 + EX28DRAFT_2188 0.77 +0.5 2,210,299 + EX28DRAFT_2188 0.77 -0.4 2,210,405 - +0.4 2,210,465 - -0.7 2,210,507 + -3.0 2,210,631 + EX28DRAFT_2189 0.21 -2.3 2,210,805 + EX28DRAFT_2189 0.47 -0.5 2,210,844 + EX28DRAFT_2189 0.52 +0.3 2,210,952 + EX28DRAFT_2189 0.68 +0.2 2,210,986 + EX28DRAFT_2189 0.73 +0.3 2,210,987 - EX28DRAFT_2189 0.73 +0.3 2,211,054 + EX28DRAFT_2189 0.83 +0.7 2,211,055 - EX28DRAFT_2189 0.84 -0.0 2,211,171 + +0.2 2,211,171 + -1.9 2,211,195 - -1.2 2,211,195 - -0.2 2,211,195 - +0.6 2,211,205 + -0.1 2,211,206 - +0.1 2,211,216 + +0.5 2,211,296 + +0.6 2,211,297 - -0.1 2,211,302 - +0.4 2,211,392 + -0.7 2,211,393 - -1.2 2,211,421 + +1.4
Or see this region's nucleotide sequence