Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2183 and EX28DRAFT_2184 are separated by 243 nucleotides EX28DRAFT_2184 and EX28DRAFT_2185 are separated by 122 nucleotides EX28DRAFT_2185 and EX28DRAFT_2186 are separated by 168 nucleotides
EX28DRAFT_2183: EX28DRAFT_2183 - Predicted SAM-dependent methyltransferase, at 2,206,184 to 2,207,095
_2183
EX28DRAFT_2184: EX28DRAFT_2184 - Protein of unknown function (DUF1471), at 2,207,339 to 2,207,605
_2184
EX28DRAFT_2185: EX28DRAFT_2185 - transcriptional regulator, TraR/DksA family, at 2,207,728 to 2,207,994
_2185
EX28DRAFT_2186: EX28DRAFT_2186 - Protein of unknown function (DUF1471), at 2,208,163 to 2,208,540
_2186
Position (kb)
2207
2208 Strain fitness (log2 ratio)
-1
0
1 at 2206.557 kb on + strand, within EX28DRAFT_2183 at 2206.558 kb on - strand, within EX28DRAFT_2183 at 2206.654 kb on + strand, within EX28DRAFT_2183 at 2206.741 kb on - strand, within EX28DRAFT_2183 at 2206.840 kb on - strand, within EX28DRAFT_2183 at 2206.999 kb on - strand, within EX28DRAFT_2183 at 2206.999 kb on - strand, within EX28DRAFT_2183 at 2207.195 kb on + strand at 2207.195 kb on + strand at 2207.196 kb on - strand at 2207.262 kb on + strand at 2207.271 kb on + strand at 2207.348 kb on + strand at 2207.349 kb on - strand at 2207.446 kb on - strand, within EX28DRAFT_2184 at 2207.469 kb on + strand, within EX28DRAFT_2184 at 2207.569 kb on + strand, within EX28DRAFT_2184 at 2207.569 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.580 kb on - strand at 2207.599 kb on + strand at 2207.599 kb on + strand at 2207.604 kb on - strand at 2207.604 kb on - strand at 2207.959 kb on - strand, within EX28DRAFT_2185 at 2207.987 kb on + strand at 2208.113 kb on + strand at 2208.146 kb on - strand at 2208.221 kb on + strand, within EX28DRAFT_2186 at 2208.275 kb on + strand, within EX28DRAFT_2186 at 2208.296 kb on - strand, within EX28DRAFT_2186 at 2208.296 kb on - strand, within EX28DRAFT_2186 at 2208.363 kb on + strand, within EX28DRAFT_2186 at 2208.399 kb on - strand, within EX28DRAFT_2186 at 2208.487 kb on - strand, within EX28DRAFT_2186 at 2208.533 kb on - strand at 2208.538 kb on + strand at 2208.538 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,206,557 + EX28DRAFT_2183 0.41 -1.6 2,206,558 - EX28DRAFT_2183 0.41 -0.3 2,206,654 + EX28DRAFT_2183 0.52 -0.5 2,206,741 - EX28DRAFT_2183 0.61 +0.0 2,206,840 - EX28DRAFT_2183 0.72 -1.5 2,206,999 - EX28DRAFT_2183 0.89 +0.0 2,206,999 - EX28DRAFT_2183 0.89 +0.1 2,207,195 + +0.3 2,207,195 + -1.1 2,207,196 - -0.5 2,207,262 + +0.5 2,207,271 + -0.2 2,207,348 + +0.0 2,207,349 - +0.4 2,207,446 - EX28DRAFT_2184 0.40 +0.7 2,207,469 + EX28DRAFT_2184 0.49 -0.1 2,207,569 + EX28DRAFT_2184 0.86 +0.4 2,207,569 + EX28DRAFT_2184 0.86 -0.1 2,207,575 + EX28DRAFT_2184 0.88 -0.3 2,207,575 + EX28DRAFT_2184 0.88 +0.0 2,207,575 + EX28DRAFT_2184 0.88 -0.3 2,207,575 + EX28DRAFT_2184 0.88 +0.1 2,207,575 + EX28DRAFT_2184 0.88 +0.3 2,207,575 + EX28DRAFT_2184 0.88 -0.7 2,207,576 - EX28DRAFT_2184 0.89 -1.7 2,207,576 - EX28DRAFT_2184 0.89 +0.0 2,207,576 - EX28DRAFT_2184 0.89 +0.3 2,207,576 - EX28DRAFT_2184 0.89 -0.1 2,207,580 - +0.5 2,207,599 + -0.9 2,207,599 + +0.7 2,207,604 - -0.4 2,207,604 - -0.1 2,207,959 - EX28DRAFT_2185 0.87 +0.3 2,207,987 + -0.0 2,208,113 + -0.2 2,208,146 - +0.2 2,208,221 + EX28DRAFT_2186 0.15 +0.1 2,208,275 + EX28DRAFT_2186 0.30 -0.4 2,208,296 - EX28DRAFT_2186 0.35 -0.8 2,208,296 - EX28DRAFT_2186 0.35 -0.2 2,208,363 + EX28DRAFT_2186 0.53 -1.2 2,208,399 - EX28DRAFT_2186 0.62 +0.5 2,208,487 - EX28DRAFT_2186 0.86 +1.0 2,208,533 - -0.5 2,208,538 + +1.3 2,208,538 + +0.7
Or see this region's nucleotide sequence