Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2149

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2148 and EX28DRAFT_2149 are separated by 42 nucleotidesEX28DRAFT_2149 and EX28DRAFT_2150 are separated by 15 nucleotides EX28DRAFT_2148: EX28DRAFT_2148 - Uncharacterized protein conserved in bacteria, at 2,172,762 to 2,173,682 _2148 EX28DRAFT_2149: EX28DRAFT_2149 - Transcriptional regulators, at 2,173,725 to 2,174,441 _2149 EX28DRAFT_2150: EX28DRAFT_2150 - PTS system, lactose/cellobiose family IIC component, at 2,174,457 to 2,175,779 _2150 Position (kb) 2173 2174 2175Strain fitness (log2 ratio) -2 -1 0 1 2at 2172.745 kb on + strandat 2172.745 kb on + strandat 2172.745 kb on + strandat 2172.746 kb on - strandat 2172.746 kb on - strandat 2172.746 kb on - strandat 2172.749 kb on + strandat 2172.749 kb on + strandat 2172.776 kb on - strandat 2172.925 kb on - strand, within EX28DRAFT_2148at 2172.956 kb on + strand, within EX28DRAFT_2148at 2172.990 kb on + strand, within EX28DRAFT_2148at 2173.020 kb on - strand, within EX28DRAFT_2148at 2173.092 kb on + strand, within EX28DRAFT_2148at 2173.096 kb on - strand, within EX28DRAFT_2148at 2173.096 kb on - strand, within EX28DRAFT_2148at 2173.317 kb on + strand, within EX28DRAFT_2148at 2173.506 kb on + strand, within EX28DRAFT_2148at 2173.684 kb on - strandat 2173.783 kb on + strandat 2173.810 kb on + strand, within EX28DRAFT_2149at 2173.810 kb on + strand, within EX28DRAFT_2149at 2173.833 kb on + strand, within EX28DRAFT_2149at 2173.946 kb on - strand, within EX28DRAFT_2149at 2174.065 kb on + strand, within EX28DRAFT_2149at 2174.066 kb on - strand, within EX28DRAFT_2149at 2174.066 kb on - strand, within EX28DRAFT_2149at 2174.066 kb on - strand, within EX28DRAFT_2149at 2174.380 kb on + strandat 2174.381 kb on - strandat 2174.428 kb on + strandat 2174.429 kb on - strandat 2174.429 kb on - strandat 2174.429 kb on - strandat 2174.518 kb on + strandat 2174.518 kb on + strandat 2174.660 kb on + strand, within EX28DRAFT_2150at 2174.660 kb on + strand, within EX28DRAFT_2150at 2174.773 kb on - strand, within EX28DRAFT_2150at 2174.773 kb on - strand, within EX28DRAFT_2150at 2174.904 kb on - strand, within EX28DRAFT_2150at 2174.913 kb on - strand, within EX28DRAFT_2150at 2175.046 kb on + strand, within EX28DRAFT_2150at 2175.113 kb on + strand, within EX28DRAFT_2150at 2175.113 kb on + strand, within EX28DRAFT_2150at 2175.114 kb on - strand, within EX28DRAFT_2150at 2175.114 kb on - strand, within EX28DRAFT_2150at 2175.398 kb on + strand, within EX28DRAFT_2150

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,172,745 + +0.1
2,172,745 + -0.2
2,172,745 + -0.8
2,172,746 - -0.2
2,172,746 - -0.7
2,172,746 - -1.1
2,172,749 + +0.7
2,172,749 + +0.7
2,172,776 - +0.9
2,172,925 - EX28DRAFT_2148 0.18 +1.9
2,172,956 + EX28DRAFT_2148 0.21 -0.8
2,172,990 + EX28DRAFT_2148 0.25 +0.3
2,173,020 - EX28DRAFT_2148 0.28 -1.9
2,173,092 + EX28DRAFT_2148 0.36 -1.0
2,173,096 - EX28DRAFT_2148 0.36 -1.2
2,173,096 - EX28DRAFT_2148 0.36 +0.2
2,173,317 + EX28DRAFT_2148 0.60 -0.5
2,173,506 + EX28DRAFT_2148 0.81 -0.8
2,173,684 - +1.4
2,173,783 + +0.1
2,173,810 + EX28DRAFT_2149 0.12 +0.0
2,173,810 + EX28DRAFT_2149 0.12 -0.6
2,173,833 + EX28DRAFT_2149 0.15 -1.0
2,173,946 - EX28DRAFT_2149 0.31 -0.6
2,174,065 + EX28DRAFT_2149 0.47 +0.1
2,174,066 - EX28DRAFT_2149 0.48 -0.0
2,174,066 - EX28DRAFT_2149 0.48 -0.1
2,174,066 - EX28DRAFT_2149 0.48 -0.2
2,174,380 + -0.2
2,174,381 - +0.1
2,174,428 + -0.1
2,174,429 - -0.1
2,174,429 - -0.7
2,174,429 - -0.3
2,174,518 + -0.4
2,174,518 + -1.0
2,174,660 + EX28DRAFT_2150 0.15 -1.1
2,174,660 + EX28DRAFT_2150 0.15 +0.4
2,174,773 - EX28DRAFT_2150 0.24 -0.3
2,174,773 - EX28DRAFT_2150 0.24 -0.3
2,174,904 - EX28DRAFT_2150 0.34 +0.0
2,174,913 - EX28DRAFT_2150 0.34 -1.2
2,175,046 + EX28DRAFT_2150 0.45 +1.2
2,175,113 + EX28DRAFT_2150 0.50 -0.6
2,175,113 + EX28DRAFT_2150 0.50 +0.2
2,175,114 - EX28DRAFT_2150 0.50 -0.1
2,175,114 - EX28DRAFT_2150 0.50 +0.7
2,175,398 + EX28DRAFT_2150 0.71 +0.4

Or see this region's nucleotide sequence