Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2146

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2145 and EX28DRAFT_2146 are separated by 17 nucleotidesEX28DRAFT_2146 and EX28DRAFT_2147 are separated by 90 nucleotides EX28DRAFT_2145: EX28DRAFT_2145 - Sugar phosphate permease, at 2,167,171 to 2,168,472 _2145 EX28DRAFT_2146: EX28DRAFT_2146 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 2,168,490 to 2,170,853 _2146 EX28DRAFT_2147: EX28DRAFT_2147 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,170,944 to 2,172,539 _2147 Position (kb) 2168 2169 2170 2171Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2167.519 kb on - strand, within EX28DRAFT_2145at 2167.675 kb on + strand, within EX28DRAFT_2145at 2167.676 kb on - strand, within EX28DRAFT_2145at 2167.714 kb on - strand, within EX28DRAFT_2145at 2167.765 kb on + strand, within EX28DRAFT_2145at 2167.765 kb on + strand, within EX28DRAFT_2145at 2167.766 kb on - strand, within EX28DRAFT_2145at 2167.766 kb on - strand, within EX28DRAFT_2145at 2167.766 kb on - strand, within EX28DRAFT_2145at 2167.897 kb on + strand, within EX28DRAFT_2145at 2168.077 kb on + strand, within EX28DRAFT_2145at 2168.185 kb on + strand, within EX28DRAFT_2145at 2168.185 kb on + strand, within EX28DRAFT_2145at 2168.185 kb on + strand, within EX28DRAFT_2145at 2168.186 kb on - strand, within EX28DRAFT_2145at 2168.186 kb on - strand, within EX28DRAFT_2145at 2168.188 kb on - strand, within EX28DRAFT_2145at 2168.188 kb on - strand, within EX28DRAFT_2145at 2168.435 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.483 kb on - strandat 2168.577 kb on + strandat 2168.578 kb on - strandat 2168.699 kb on + strandat 2168.699 kb on + strandat 2168.699 kb on + strandat 2168.701 kb on + strandat 2168.908 kb on - strand, within EX28DRAFT_2146at 2169.015 kb on + strand, within EX28DRAFT_2146at 2169.051 kb on - strand, within EX28DRAFT_2146at 2169.051 kb on - strand, within EX28DRAFT_2146at 2169.150 kb on + strand, within EX28DRAFT_2146at 2169.150 kb on + strand, within EX28DRAFT_2146at 2169.151 kb on - strand, within EX28DRAFT_2146at 2169.198 kb on + strand, within EX28DRAFT_2146at 2169.199 kb on - strand, within EX28DRAFT_2146at 2169.201 kb on + strand, within EX28DRAFT_2146at 2169.202 kb on - strand, within EX28DRAFT_2146at 2169.442 kb on + strand, within EX28DRAFT_2146at 2169.443 kb on - strand, within EX28DRAFT_2146at 2169.443 kb on - strand, within EX28DRAFT_2146at 2169.447 kb on - strand, within EX28DRAFT_2146at 2169.457 kb on - strand, within EX28DRAFT_2146at 2169.564 kb on - strand, within EX28DRAFT_2146at 2169.663 kb on - strand, within EX28DRAFT_2146at 2169.897 kb on + strand, within EX28DRAFT_2146at 2169.902 kb on + strand, within EX28DRAFT_2146at 2169.903 kb on - strand, within EX28DRAFT_2146at 2169.988 kb on - strand, within EX28DRAFT_2146at 2169.989 kb on + strand, within EX28DRAFT_2146at 2170.176 kb on + strand, within EX28DRAFT_2146at 2170.237 kb on - strand, within EX28DRAFT_2146at 2170.242 kb on + strand, within EX28DRAFT_2146at 2170.243 kb on - strand, within EX28DRAFT_2146at 2170.851 kb on + strandat 2170.851 kb on + strandat 2170.972 kb on + strandat 2170.973 kb on - strandat 2171.016 kb on - strandat 2171.090 kb on - strandat 2171.090 kb on - strandat 2171.231 kb on + strand, within EX28DRAFT_2147at 2171.383 kb on + strand, within EX28DRAFT_2147at 2171.708 kb on + strand, within EX28DRAFT_2147at 2171.708 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.821 kb on + strand, within EX28DRAFT_2147at 2171.822 kb on - strand, within EX28DRAFT_2147at 2171.830 kb on + strand, within EX28DRAFT_2147

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,167,519 - EX28DRAFT_2145 0.27 -0.1
2,167,675 + EX28DRAFT_2145 0.39 +0.3
2,167,676 - EX28DRAFT_2145 0.39 -0.2
2,167,714 - EX28DRAFT_2145 0.42 +0.5
2,167,765 + EX28DRAFT_2145 0.46 +0.6
2,167,765 + EX28DRAFT_2145 0.46 -0.7
2,167,766 - EX28DRAFT_2145 0.46 +0.1
2,167,766 - EX28DRAFT_2145 0.46 -0.6
2,167,766 - EX28DRAFT_2145 0.46 +0.4
2,167,897 + EX28DRAFT_2145 0.56 +0.9
2,168,077 + EX28DRAFT_2145 0.70 -0.6
2,168,185 + EX28DRAFT_2145 0.78 +1.1
2,168,185 + EX28DRAFT_2145 0.78 +0.1
2,168,185 + EX28DRAFT_2145 0.78 -0.2
2,168,186 - EX28DRAFT_2145 0.78 +0.1
2,168,186 - EX28DRAFT_2145 0.78 -0.2
2,168,188 - EX28DRAFT_2145 0.78 +0.5
2,168,188 - EX28DRAFT_2145 0.78 -0.4
2,168,435 + -0.3
2,168,482 + +0.5
2,168,482 + +0.9
2,168,482 + +3.2
2,168,482 + +1.2
2,168,482 + -0.5
2,168,483 - +1.2
2,168,577 + -0.5
2,168,578 - -0.7
2,168,699 + -0.4
2,168,699 + -0.8
2,168,699 + -0.1
2,168,701 + -0.2
2,168,908 - EX28DRAFT_2146 0.18 -0.1
2,169,015 + EX28DRAFT_2146 0.22 +0.5
2,169,051 - EX28DRAFT_2146 0.24 -0.2
2,169,051 - EX28DRAFT_2146 0.24 -0.2
2,169,150 + EX28DRAFT_2146 0.28 +0.5
2,169,150 + EX28DRAFT_2146 0.28 -0.1
2,169,151 - EX28DRAFT_2146 0.28 +0.1
2,169,198 + EX28DRAFT_2146 0.30 +0.1
2,169,199 - EX28DRAFT_2146 0.30 +0.5
2,169,201 + EX28DRAFT_2146 0.30 +0.3
2,169,202 - EX28DRAFT_2146 0.30 +0.9
2,169,442 + EX28DRAFT_2146 0.40 +0.1
2,169,443 - EX28DRAFT_2146 0.40 -0.4
2,169,443 - EX28DRAFT_2146 0.40 +1.0
2,169,447 - EX28DRAFT_2146 0.40 +0.4
2,169,457 - EX28DRAFT_2146 0.41 -0.2
2,169,564 - EX28DRAFT_2146 0.45 +0.3
2,169,663 - EX28DRAFT_2146 0.50 +0.3
2,169,897 + EX28DRAFT_2146 0.60 +0.7
2,169,902 + EX28DRAFT_2146 0.60 -0.5
2,169,903 - EX28DRAFT_2146 0.60 +0.0
2,169,988 - EX28DRAFT_2146 0.63 +0.7
2,169,989 + EX28DRAFT_2146 0.63 -0.3
2,170,176 + EX28DRAFT_2146 0.71 +0.7
2,170,237 - EX28DRAFT_2146 0.74 -0.2
2,170,242 + EX28DRAFT_2146 0.74 -0.0
2,170,243 - EX28DRAFT_2146 0.74 -0.5
2,170,851 + -0.3
2,170,851 + -0.3
2,170,972 + -0.3
2,170,973 - -0.0
2,171,016 - -2.2
2,171,090 - -0.8
2,171,090 - -0.2
2,171,231 + EX28DRAFT_2147 0.18 -0.0
2,171,383 + EX28DRAFT_2147 0.28 -0.2
2,171,708 + EX28DRAFT_2147 0.48 +0.2
2,171,708 + EX28DRAFT_2147 0.48 -0.0
2,171,821 + EX28DRAFT_2147 0.55 -0.1
2,171,821 + EX28DRAFT_2147 0.55 +0.3
2,171,821 + EX28DRAFT_2147 0.55 -1.2
2,171,821 + EX28DRAFT_2147 0.55 +0.5
2,171,822 - EX28DRAFT_2147 0.55 +0.8
2,171,830 + EX28DRAFT_2147 0.56 -1.7

Or see this region's nucleotide sequence