Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2084 and EX28DRAFT_2085 overlap by 4 nucleotides EX28DRAFT_2085 and EX28DRAFT_2086 are separated by 97 nucleotides EX28DRAFT_2086 and EX28DRAFT_2087 are separated by 226 nucleotides EX28DRAFT_2087 and EX28DRAFT_2088 are separated by 19 nucleotides
EX28DRAFT_2084: EX28DRAFT_2084 - Negative regulator of beta-lactamase expression, at 2,110,023 to 2,110,853
_2084
EX28DRAFT_2085: EX28DRAFT_2085 - Uncharacterized conserved protein, at 2,110,850 to 2,111,173
_2085
EX28DRAFT_2086: EX28DRAFT_2086 - hypothetical protein, at 2,111,271 to 2,111,789
_2086
EX28DRAFT_2087: EX28DRAFT_2087 - ABC-type arginine transport system, ATPase component, at 2,112,016 to 2,112,744
_2087
EX28DRAFT_2088: EX28DRAFT_2088 - lysine-arginine-ornithine-binding periplasmic protein, at 2,112,764 to 2,113,495
_2088
Position (kb)
2111
2112 Strain fitness (log2 ratio)
-1
0
1 at 2110.334 kb on + strand, within EX28DRAFT_2084 at 2110.397 kb on + strand, within EX28DRAFT_2084 at 2110.639 kb on + strand, within EX28DRAFT_2084 at 2110.702 kb on + strand, within EX28DRAFT_2084 at 2110.722 kb on + strand, within EX28DRAFT_2084 at 2110.722 kb on + strand, within EX28DRAFT_2084 at 2110.723 kb on - strand, within EX28DRAFT_2084 at 2111.125 kb on - strand, within EX28DRAFT_2085 at 2111.133 kb on - strand, within EX28DRAFT_2085 at 2111.234 kb on - strand at 2111.251 kb on + strand at 2111.252 kb on - strand at 2111.258 kb on + strand at 2111.259 kb on - strand at 2111.259 kb on - strand at 2111.418 kb on + strand, within EX28DRAFT_2086 at 2111.418 kb on + strand, within EX28DRAFT_2086 at 2111.530 kb on + strand, within EX28DRAFT_2086 at 2111.531 kb on - strand, within EX28DRAFT_2086 at 2111.915 kb on - strand at 2111.936 kb on + strand at 2111.965 kb on - strand at 2111.985 kb on + strand at 2111.986 kb on - strand at 2111.986 kb on - strand at 2111.986 kb on - strand at 2111.986 kb on - strand at 2112.002 kb on + strand at 2112.003 kb on - strand at 2112.025 kb on - strand at 2112.029 kb on + strand at 2112.040 kb on - strand at 2112.040 kb on - strand at 2112.049 kb on + strand at 2112.287 kb on - strand, within EX28DRAFT_2087 at 2112.287 kb on - strand, within EX28DRAFT_2087 at 2112.416 kb on - strand, within EX28DRAFT_2087 at 2112.588 kb on + strand, within EX28DRAFT_2087 at 2112.588 kb on + strand, within EX28DRAFT_2087 at 2112.589 kb on - strand, within EX28DRAFT_2087 at 2112.589 kb on - strand, within EX28DRAFT_2087 at 2112.592 kb on - strand, within EX28DRAFT_2087 at 2112.652 kb on + strand, within EX28DRAFT_2087 at 2112.652 kb on + strand, within EX28DRAFT_2087 at 2112.652 kb on + strand, within EX28DRAFT_2087 at 2112.653 kb on - strand, within EX28DRAFT_2087 at 2112.653 kb on - strand, within EX28DRAFT_2087 at 2112.653 kb on - strand, within EX28DRAFT_2087 at 2112.653 kb on - strand, within EX28DRAFT_2087 at 2112.670 kb on - strand, within EX28DRAFT_2087 at 2112.731 kb on - strand at 2112.734 kb on + strand at 2112.735 kb on - strand at 2112.760 kb on + strand at 2112.761 kb on - strand at 2112.761 kb on - strand at 2112.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,110,334 + EX28DRAFT_2084 0.37 -0.1 2,110,397 + EX28DRAFT_2084 0.45 +0.3 2,110,639 + EX28DRAFT_2084 0.74 -0.2 2,110,702 + EX28DRAFT_2084 0.82 +0.1 2,110,722 + EX28DRAFT_2084 0.84 +0.0 2,110,722 + EX28DRAFT_2084 0.84 +0.0 2,110,723 - EX28DRAFT_2084 0.84 +1.6 2,111,125 - EX28DRAFT_2085 0.85 +0.5 2,111,133 - EX28DRAFT_2085 0.87 +0.6 2,111,234 - -0.6 2,111,251 + -0.0 2,111,252 - +0.5 2,111,258 + +0.8 2,111,259 - -0.2 2,111,259 - -1.0 2,111,418 + EX28DRAFT_2086 0.28 +0.3 2,111,418 + EX28DRAFT_2086 0.28 +0.2 2,111,530 + EX28DRAFT_2086 0.50 +0.3 2,111,531 - EX28DRAFT_2086 0.50 +0.7 2,111,915 - +0.1 2,111,936 + -1.1 2,111,965 - +0.1 2,111,985 + +0.2 2,111,986 - -0.1 2,111,986 - +0.0 2,111,986 - +0.3 2,111,986 - +0.2 2,112,002 + -0.0 2,112,003 - -0.4 2,112,025 - -0.3 2,112,029 + -0.4 2,112,040 - -0.2 2,112,040 - -0.1 2,112,049 + -0.2 2,112,287 - EX28DRAFT_2087 0.37 +0.3 2,112,287 - EX28DRAFT_2087 0.37 +0.6 2,112,416 - EX28DRAFT_2087 0.55 +0.0 2,112,588 + EX28DRAFT_2087 0.78 -0.7 2,112,588 + EX28DRAFT_2087 0.78 -0.4 2,112,589 - EX28DRAFT_2087 0.79 +0.3 2,112,589 - EX28DRAFT_2087 0.79 -0.6 2,112,592 - EX28DRAFT_2087 0.79 +0.4 2,112,652 + EX28DRAFT_2087 0.87 +0.4 2,112,652 + EX28DRAFT_2087 0.87 +0.2 2,112,652 + EX28DRAFT_2087 0.87 +0.1 2,112,653 - EX28DRAFT_2087 0.87 -0.6 2,112,653 - EX28DRAFT_2087 0.87 -0.0 2,112,653 - EX28DRAFT_2087 0.87 -0.6 2,112,653 - EX28DRAFT_2087 0.87 +0.3 2,112,670 - EX28DRAFT_2087 0.90 -0.8 2,112,731 - +0.0 2,112,734 + -0.6 2,112,735 - +0.3 2,112,760 + +0.7 2,112,761 - +0.1 2,112,761 - +0.3 2,112,778 - -0.1
Or see this region's nucleotide sequence