Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2078 and EX28DRAFT_2079 are separated by 12 nucleotides EX28DRAFT_2079 and EX28DRAFT_2080 are separated by 13 nucleotides
EX28DRAFT_2078: EX28DRAFT_2078 - type II secretion system protein E, at 2,102,474 to 2,103,952
_2078
EX28DRAFT_2079: EX28DRAFT_2079 - type II secretion system protein D, at 2,103,965 to 2,105,890
_2079
EX28DRAFT_2080: EX28DRAFT_2080 - type II secretion system protein C, at 2,105,904 to 2,106,676
_2080
Position (kb)
2103
2104
2105
2106 Strain fitness (log2 ratio)
-1
0
1
2 at 2103.109 kb on - strand, within EX28DRAFT_2078 at 2103.184 kb on + strand, within EX28DRAFT_2078 at 2103.185 kb on - strand, within EX28DRAFT_2078 at 2103.185 kb on - strand, within EX28DRAFT_2078 at 2103.301 kb on + strand, within EX28DRAFT_2078 at 2103.302 kb on - strand, within EX28DRAFT_2078 at 2103.346 kb on - strand, within EX28DRAFT_2078 at 2103.407 kb on - strand, within EX28DRAFT_2078 at 2103.810 kb on + strand at 2103.810 kb on + strand at 2103.811 kb on - strand at 2103.849 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.874 kb on - strand at 2103.874 kb on - strand at 2103.874 kb on - strand at 2103.874 kb on - strand at 2103.888 kb on + strand at 2103.938 kb on - strand at 2104.070 kb on + strand at 2104.070 kb on + strand at 2104.128 kb on + strand at 2104.128 kb on + strand at 2104.129 kb on - strand at 2104.129 kb on - strand at 2104.153 kb on - strand at 2104.225 kb on + strand, within EX28DRAFT_2079 at 2104.226 kb on - strand, within EX28DRAFT_2079 at 2104.226 kb on - strand, within EX28DRAFT_2079 at 2104.504 kb on + strand, within EX28DRAFT_2079 at 2104.504 kb on + strand, within EX28DRAFT_2079 at 2104.713 kb on + strand, within EX28DRAFT_2079 at 2104.714 kb on - strand, within EX28DRAFT_2079 at 2104.860 kb on - strand, within EX28DRAFT_2079 at 2105.076 kb on + strand, within EX28DRAFT_2079 at 2105.640 kb on + strand, within EX28DRAFT_2079 at 2105.640 kb on + strand, within EX28DRAFT_2079 at 2105.673 kb on + strand, within EX28DRAFT_2079 at 2105.691 kb on - strand, within EX28DRAFT_2079 at 2105.697 kb on + strand, within EX28DRAFT_2079 at 2105.698 kb on - strand at 2105.698 kb on - strand at 2105.750 kb on - strand at 2105.753 kb on - strand at 2105.843 kb on + strand at 2105.896 kb on + strand at 2105.903 kb on - strand at 2106.051 kb on + strand, within EX28DRAFT_2080 at 2106.107 kb on + strand, within EX28DRAFT_2080 at 2106.142 kb on - strand, within EX28DRAFT_2080 at 2106.183 kb on + strand, within EX28DRAFT_2080 at 2106.428 kb on + strand, within EX28DRAFT_2080 at 2106.744 kb on - strand at 2106.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,103,109 - EX28DRAFT_2078 0.43 +0.9 2,103,184 + EX28DRAFT_2078 0.48 +0.5 2,103,185 - EX28DRAFT_2078 0.48 +0.5 2,103,185 - EX28DRAFT_2078 0.48 +0.0 2,103,301 + EX28DRAFT_2078 0.56 -0.4 2,103,302 - EX28DRAFT_2078 0.56 +0.4 2,103,346 - EX28DRAFT_2078 0.59 -0.0 2,103,407 - EX28DRAFT_2078 0.63 +0.1 2,103,810 + +1.1 2,103,810 + +0.2 2,103,811 - -0.0 2,103,849 + +0.2 2,103,873 + -0.3 2,103,873 + +0.2 2,103,873 + -0.0 2,103,873 + -0.0 2,103,873 + -1.1 2,103,874 - +0.1 2,103,874 - +0.1 2,103,874 - +0.2 2,103,874 - +0.5 2,103,888 + +0.1 2,103,938 - +0.4 2,104,070 + +1.0 2,104,070 + -0.9 2,104,128 + -0.7 2,104,128 + -0.9 2,104,129 - -0.1 2,104,129 - -0.5 2,104,153 - -0.1 2,104,225 + EX28DRAFT_2079 0.13 +1.0 2,104,226 - EX28DRAFT_2079 0.14 +0.1 2,104,226 - EX28DRAFT_2079 0.14 +0.5 2,104,504 + EX28DRAFT_2079 0.28 -0.6 2,104,504 + EX28DRAFT_2079 0.28 -0.0 2,104,713 + EX28DRAFT_2079 0.39 +0.3 2,104,714 - EX28DRAFT_2079 0.39 -0.1 2,104,860 - EX28DRAFT_2079 0.46 -1.2 2,105,076 + EX28DRAFT_2079 0.58 +0.4 2,105,640 + EX28DRAFT_2079 0.87 -0.2 2,105,640 + EX28DRAFT_2079 0.87 -0.7 2,105,673 + EX28DRAFT_2079 0.89 +1.9 2,105,691 - EX28DRAFT_2079 0.90 +0.2 2,105,697 + EX28DRAFT_2079 0.90 +0.2 2,105,698 - +0.4 2,105,698 - +0.2 2,105,750 - +0.2 2,105,753 - -0.7 2,105,843 + -0.4 2,105,896 + -0.2 2,105,903 - -0.6 2,106,051 + EX28DRAFT_2080 0.19 +0.3 2,106,107 + EX28DRAFT_2080 0.26 +0.2 2,106,142 - EX28DRAFT_2080 0.31 -0.8 2,106,183 + EX28DRAFT_2080 0.36 +0.1 2,106,428 + EX28DRAFT_2080 0.68 -0.2 2,106,744 - -0.5 2,106,881 - +0.3
Or see this region's nucleotide sequence