Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1948 and EX28DRAFT_1949 overlap by 21 nucleotides EX28DRAFT_1949 and EX28DRAFT_1950 overlap by 4 nucleotides EX28DRAFT_1950 and EX28DRAFT_1951 are separated by 239 nucleotides
EX28DRAFT_1948: EX28DRAFT_1948 - guanine deaminase (EC 3.5.4.3), at 1,953,546 to 1,954,862
_1948
EX28DRAFT_1949: EX28DRAFT_1949 - hydroxyisourate hydrolase, at 1,954,842 to 1,955,165
_1949
EX28DRAFT_1950: EX28DRAFT_1950 - OHCU decarboxylase, at 1,955,162 to 1,955,662
_1950
EX28DRAFT_1951: EX28DRAFT_1951 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 1,955,902 to 1,957,056
_1951
Position (kb)
1955
1956 Strain fitness (log2 ratio)
-1
0
1
2 at 1954.563 kb on + strand, within EX28DRAFT_1948 at 1954.563 kb on + strand, within EX28DRAFT_1948 at 1954.564 kb on - strand, within EX28DRAFT_1948 at 1954.761 kb on + strand at 1954.761 kb on + strand at 1954.762 kb on - strand at 1955.094 kb on + strand, within EX28DRAFT_1949 at 1955.094 kb on + strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.145 kb on - strand at 1955.198 kb on - strand at 1955.274 kb on - strand, within EX28DRAFT_1950 at 1955.279 kb on - strand, within EX28DRAFT_1950 at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.663 kb on - strand at 1955.663 kb on - strand at 1955.675 kb on - strand at 1955.746 kb on - strand at 1955.803 kb on + strand at 1955.872 kb on + strand at 1955.872 kb on + strand at 1956.119 kb on - strand, within EX28DRAFT_1951 at 1956.284 kb on + strand, within EX28DRAFT_1951 at 1956.548 kb on - strand, within EX28DRAFT_1951
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,954,563 + EX28DRAFT_1948 0.77 +0.9 1,954,563 + EX28DRAFT_1948 0.77 +1.4 1,954,564 - EX28DRAFT_1948 0.77 -0.4 1,954,761 + -0.0 1,954,761 + +0.6 1,954,762 - +0.0 1,955,094 + EX28DRAFT_1949 0.78 -0.4 1,955,094 + EX28DRAFT_1949 0.78 -0.3 1,955,095 - EX28DRAFT_1949 0.78 +0.7 1,955,095 - EX28DRAFT_1949 0.78 -0.1 1,955,095 - EX28DRAFT_1949 0.78 -0.2 1,955,095 - EX28DRAFT_1949 0.78 -0.0 1,955,145 - +0.0 1,955,198 - -1.0 1,955,274 - EX28DRAFT_1950 0.22 -0.4 1,955,279 - EX28DRAFT_1950 0.23 +0.2 1,955,662 + -1.2 1,955,662 + -0.2 1,955,662 + +0.0 1,955,662 + +0.0 1,955,662 + -0.2 1,955,663 - -1.3 1,955,663 - +0.3 1,955,675 - -0.2 1,955,746 - +1.8 1,955,803 + -0.7 1,955,872 + -1.4 1,955,872 + +0.2 1,956,119 - EX28DRAFT_1951 0.19 +0.2 1,956,284 + EX28DRAFT_1951 0.33 -0.5 1,956,548 - EX28DRAFT_1951 0.56 +0.2
Or see this region's nucleotide sequence