Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1906 and EX28DRAFT_1907 are separated by 40 nucleotides EX28DRAFT_1907 and EX28DRAFT_1908 are separated by 251 nucleotides
EX28DRAFT_1906: EX28DRAFT_1906 - Predicted periplasmic lipoprotein involved in iron transport, at 1,914,189 to 1,915,316
_1906
EX28DRAFT_1907: EX28DRAFT_1907 - FTR1 family protein, at 1,915,357 to 1,916,190
_1907
EX28DRAFT_1908: EX28DRAFT_1908 - Nucleoside permease, at 1,916,442 to 1,917,626
_1908
Position (kb)
1915
1916
1917 Strain fitness (log2 ratio)
-1
0
1
2 at 1914.363 kb on - strand, within EX28DRAFT_1906 at 1914.410 kb on + strand, within EX28DRAFT_1906 at 1914.410 kb on + strand, within EX28DRAFT_1906 at 1914.411 kb on - strand, within EX28DRAFT_1906 at 1914.470 kb on - strand, within EX28DRAFT_1906 at 1914.470 kb on - strand, within EX28DRAFT_1906 at 1914.613 kb on + strand, within EX28DRAFT_1906 at 1914.613 kb on + strand, within EX28DRAFT_1906 at 1914.614 kb on - strand, within EX28DRAFT_1906 at 1914.614 kb on - strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.617 kb on + strand, within EX28DRAFT_1906 at 1914.779 kb on - strand, within EX28DRAFT_1906 at 1914.800 kb on - strand, within EX28DRAFT_1906 at 1914.909 kb on - strand, within EX28DRAFT_1906 at 1915.021 kb on + strand, within EX28DRAFT_1906 at 1915.231 kb on - strand at 1915.296 kb on - strand at 1915.296 kb on - strand at 1915.430 kb on + strand at 1915.431 kb on - strand at 1915.434 kb on + strand at 1915.434 kb on + strand at 1915.434 kb on + strand at 1915.435 kb on - strand at 1915.435 kb on - strand at 1915.439 kb on + strand at 1915.440 kb on - strand at 1915.630 kb on - strand, within EX28DRAFT_1907 at 1915.686 kb on - strand, within EX28DRAFT_1907 at 1915.918 kb on - strand, within EX28DRAFT_1907 at 1915.918 kb on - strand, within EX28DRAFT_1907 at 1916.066 kb on - strand, within EX28DRAFT_1907 at 1916.165 kb on - strand at 1916.170 kb on - strand at 1916.202 kb on - strand at 1916.250 kb on + strand at 1916.334 kb on - strand at 1916.334 kb on - strand at 1916.358 kb on + strand at 1916.359 kb on - strand at 1916.360 kb on + strand at 1916.361 kb on - strand at 1916.361 kb on - strand at 1916.366 kb on - strand at 1916.366 kb on - strand at 1916.437 kb on + strand at 1916.439 kb on - strand at 1916.441 kb on + strand at 1916.543 kb on - strand at 1916.902 kb on - strand, within EX28DRAFT_1908 at 1916.995 kb on - strand, within EX28DRAFT_1908 at 1916.995 kb on - strand, within EX28DRAFT_1908 at 1916.996 kb on + strand, within EX28DRAFT_1908 at 1916.996 kb on + strand, within EX28DRAFT_1908 at 1916.997 kb on - strand, within EX28DRAFT_1908 at 1917.062 kb on + strand, within EX28DRAFT_1908 at 1917.062 kb on + strand, within EX28DRAFT_1908 at 1917.163 kb on - strand, within EX28DRAFT_1908 at 1917.165 kb on - strand, within EX28DRAFT_1908
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,914,363 - EX28DRAFT_1906 0.15 +0.1 1,914,410 + EX28DRAFT_1906 0.20 +0.4 1,914,410 + EX28DRAFT_1906 0.20 -0.5 1,914,411 - EX28DRAFT_1906 0.20 +2.6 1,914,470 - EX28DRAFT_1906 0.25 +0.3 1,914,470 - EX28DRAFT_1906 0.25 -0.6 1,914,613 + EX28DRAFT_1906 0.38 -0.5 1,914,613 + EX28DRAFT_1906 0.38 +0.0 1,914,614 - EX28DRAFT_1906 0.38 +0.7 1,914,614 - EX28DRAFT_1906 0.38 +0.3 1,914,617 + EX28DRAFT_1906 0.38 +0.3 1,914,617 + EX28DRAFT_1906 0.38 -1.5 1,914,617 + EX28DRAFT_1906 0.38 -0.1 1,914,617 + EX28DRAFT_1906 0.38 -0.1 1,914,779 - EX28DRAFT_1906 0.52 +0.3 1,914,800 - EX28DRAFT_1906 0.54 -0.2 1,914,909 - EX28DRAFT_1906 0.64 +0.0 1,915,021 + EX28DRAFT_1906 0.74 -0.5 1,915,231 - +0.1 1,915,296 - +0.9 1,915,296 - -0.3 1,915,430 + -0.2 1,915,431 - +0.9 1,915,434 + -0.0 1,915,434 + -0.1 1,915,434 + -0.4 1,915,435 - +0.1 1,915,435 - +0.2 1,915,439 + -0.8 1,915,440 - +0.4 1,915,630 - EX28DRAFT_1907 0.33 +0.6 1,915,686 - EX28DRAFT_1907 0.39 +1.2 1,915,918 - EX28DRAFT_1907 0.67 +0.0 1,915,918 - EX28DRAFT_1907 0.67 +0.4 1,916,066 - EX28DRAFT_1907 0.85 +0.6 1,916,165 - +0.3 1,916,170 - -0.3 1,916,202 - +0.6 1,916,250 + -1.6 1,916,334 - -0.6 1,916,334 - +0.3 1,916,358 + -0.0 1,916,359 - +0.2 1,916,360 + +0.3 1,916,361 - -0.2 1,916,361 - +0.6 1,916,366 - -0.6 1,916,366 - +0.5 1,916,437 + +0.1 1,916,439 - +0.1 1,916,441 + +2.7 1,916,543 - -0.4 1,916,902 - EX28DRAFT_1908 0.39 +0.3 1,916,995 - EX28DRAFT_1908 0.47 -0.8 1,916,995 - EX28DRAFT_1908 0.47 +0.2 1,916,996 + EX28DRAFT_1908 0.47 +0.3 1,916,996 + EX28DRAFT_1908 0.47 -0.0 1,916,997 - EX28DRAFT_1908 0.47 +0.0 1,917,062 + EX28DRAFT_1908 0.52 +1.0 1,917,062 + EX28DRAFT_1908 0.52 -0.1 1,917,163 - EX28DRAFT_1908 0.61 +0.2 1,917,165 - EX28DRAFT_1908 0.61 +0.1
Or see this region's nucleotide sequence