Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1791 and EX28DRAFT_1792 are separated by 290 nucleotides EX28DRAFT_1792 and EX28DRAFT_1793 are separated by 74 nucleotides EX28DRAFT_1793 and EX28DRAFT_1794 are separated by 77 nucleotides
EX28DRAFT_1791: EX28DRAFT_1791 - Predicted signal transduction protein containing sensor and EAL domains, at 1,805,599 to 1,807,098
_1791
EX28DRAFT_1792: EX28DRAFT_1792 - Protein of unknown function (DUF2543), at 1,807,389 to 1,807,634
_1792
EX28DRAFT_1793: EX28DRAFT_1793 - Predicted membrane protein, at 1,807,709 to 1,808,056
_1793
EX28DRAFT_1794: EX28DRAFT_1794 - isocitrate dehydrogenase (NADP) (EC 1.1.1.42), at 1,808,134 to 1,809,384
_1794
Position (kb)
1807
1808
1809 Strain fitness (log2 ratio)
-2
-1
0
1 at 1806.794 kb on + strand, within EX28DRAFT_1791 at 1806.899 kb on - strand, within EX28DRAFT_1791 at 1807.097 kb on - strand at 1807.162 kb on + strand at 1807.182 kb on + strand at 1807.228 kb on + strand at 1807.229 kb on - strand at 1807.235 kb on - strand at 1807.237 kb on + strand at 1807.237 kb on + strand at 1807.238 kb on - strand at 1807.390 kb on + strand at 1807.531 kb on + strand, within EX28DRAFT_1792 at 1807.532 kb on - strand, within EX28DRAFT_1792 at 1807.588 kb on + strand, within EX28DRAFT_1792 at 1807.674 kb on + strand at 1807.674 kb on + strand at 1807.674 kb on + strand at 1807.674 kb on + strand at 1807.675 kb on - strand at 1807.675 kb on - strand at 1807.688 kb on + strand at 1807.689 kb on - strand at 1807.755 kb on - strand, within EX28DRAFT_1793 at 1807.755 kb on - strand, within EX28DRAFT_1793 at 1807.755 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.896 kb on + strand, within EX28DRAFT_1793 at 1807.896 kb on + strand, within EX28DRAFT_1793 at 1807.896 kb on + strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1808.011 kb on - strand, within EX28DRAFT_1793 at 1808.011 kb on - strand, within EX28DRAFT_1793 at 1808.118 kb on + strand at 1808.119 kb on - strand at 1808.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,806,794 + EX28DRAFT_1791 0.80 -0.7 1,806,899 - EX28DRAFT_1791 0.87 -0.8 1,807,097 - +0.5 1,807,162 + +0.7 1,807,182 + +0.3 1,807,228 + -0.4 1,807,229 - +0.6 1,807,235 - -0.9 1,807,237 + +0.1 1,807,237 + +0.2 1,807,238 - +0.0 1,807,390 + +0.1 1,807,531 + EX28DRAFT_1792 0.58 -0.1 1,807,532 - EX28DRAFT_1792 0.58 +0.8 1,807,588 + EX28DRAFT_1792 0.81 -0.5 1,807,674 + +0.5 1,807,674 + -0.8 1,807,674 + +0.7 1,807,674 + -0.2 1,807,675 - +0.1 1,807,675 - +0.4 1,807,688 + -1.6 1,807,689 - +0.1 1,807,755 - EX28DRAFT_1793 0.13 +0.0 1,807,755 - EX28DRAFT_1793 0.13 -0.8 1,807,755 - EX28DRAFT_1793 0.13 -0.7 1,807,759 - EX28DRAFT_1793 0.14 +0.2 1,807,759 - EX28DRAFT_1793 0.14 -1.0 1,807,759 - EX28DRAFT_1793 0.14 -0.3 1,807,759 - EX28DRAFT_1793 0.14 -0.1 1,807,896 + EX28DRAFT_1793 0.54 -2.6 1,807,896 + EX28DRAFT_1793 0.54 -0.6 1,807,896 + EX28DRAFT_1793 0.54 +0.5 1,807,897 - EX28DRAFT_1793 0.54 +0.3 1,807,897 - EX28DRAFT_1793 0.54 +0.6 1,807,897 - EX28DRAFT_1793 0.54 -0.3 1,807,897 - EX28DRAFT_1793 0.54 -0.7 1,808,011 - EX28DRAFT_1793 0.87 -0.6 1,808,011 - EX28DRAFT_1793 0.87 -0.2 1,808,118 + -0.1 1,808,119 - -0.4 1,808,136 - -0.6
Or see this region's nucleotide sequence