Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1776 and EX28DRAFT_1777 are separated by 57 nucleotides EX28DRAFT_1777 and EX28DRAFT_1778 are separated by 98 nucleotides EX28DRAFT_1778 and EX28DRAFT_1779 are separated by 267 nucleotides
EX28DRAFT_1776: EX28DRAFT_1776 - putative serine protein kinase, PrkA, at 1,791,602 to 1,793,536
_1776
EX28DRAFT_1777: EX28DRAFT_1777 - Uncharacterized conserved protein, at 1,793,594 to 1,794,895
_1777
EX28DRAFT_1778: EX28DRAFT_1778 - Uncharacterized conserved protein, at 1,794,994 to 1,795,494
_1778
EX28DRAFT_1779: EX28DRAFT_1779 - Predicted membrane protein, at 1,795,762 to 1,796,208
_1779
Position (kb)
1793
1794
1795 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1792.745 kb on + strand, within EX28DRAFT_1776 at 1792.746 kb on - strand, within EX28DRAFT_1776 at 1792.763 kb on + strand, within EX28DRAFT_1776 at 1792.809 kb on - strand, within EX28DRAFT_1776 at 1792.876 kb on + strand, within EX28DRAFT_1776 at 1792.943 kb on + strand, within EX28DRAFT_1776 at 1792.943 kb on + strand, within EX28DRAFT_1776 at 1793.000 kb on + strand, within EX28DRAFT_1776 at 1793.084 kb on + strand, within EX28DRAFT_1776 at 1793.093 kb on + strand, within EX28DRAFT_1776 at 1793.118 kb on - strand, within EX28DRAFT_1776 at 1793.127 kb on - strand, within EX28DRAFT_1776 at 1793.127 kb on - strand, within EX28DRAFT_1776 at 1793.458 kb on + strand at 1793.459 kb on - strand at 1793.459 kb on - strand at 1793.475 kb on - strand at 1793.609 kb on + strand at 1793.609 kb on + strand at 1793.609 kb on + strand at 1793.611 kb on + strand at 1793.624 kb on - strand at 1793.689 kb on + strand at 1793.689 kb on + strand at 1793.710 kb on + strand at 1793.982 kb on - strand, within EX28DRAFT_1777 at 1794.055 kb on + strand, within EX28DRAFT_1777 at 1794.056 kb on - strand, within EX28DRAFT_1777 at 1794.268 kb on + strand, within EX28DRAFT_1777 at 1794.327 kb on - strand, within EX28DRAFT_1777 at 1794.440 kb on + strand, within EX28DRAFT_1777 at 1794.461 kb on + strand, within EX28DRAFT_1777 at 1794.461 kb on + strand, within EX28DRAFT_1777 at 1794.462 kb on - strand, within EX28DRAFT_1777 at 1794.463 kb on + strand, within EX28DRAFT_1777 at 1794.477 kb on + strand, within EX28DRAFT_1777 at 1794.478 kb on - strand, within EX28DRAFT_1777 at 1794.482 kb on + strand, within EX28DRAFT_1777 at 1794.483 kb on - strand, within EX28DRAFT_1777 at 1794.483 kb on - strand, within EX28DRAFT_1777 at 1794.483 kb on - strand, within EX28DRAFT_1777 at 1794.497 kb on - strand, within EX28DRAFT_1777 at 1794.561 kb on + strand, within EX28DRAFT_1777 at 1794.562 kb on - strand, within EX28DRAFT_1777 at 1794.625 kb on + strand, within EX28DRAFT_1777 at 1794.626 kb on - strand, within EX28DRAFT_1777 at 1794.629 kb on + strand, within EX28DRAFT_1777 at 1794.725 kb on + strand, within EX28DRAFT_1777 at 1794.725 kb on + strand, within EX28DRAFT_1777 at 1794.726 kb on - strand, within EX28DRAFT_1777 at 1794.726 kb on - strand, within EX28DRAFT_1777 at 1794.726 kb on - strand, within EX28DRAFT_1777 at 1794.726 kb on - strand, within EX28DRAFT_1777 at 1794.731 kb on + strand, within EX28DRAFT_1777 at 1794.731 kb on + strand, within EX28DRAFT_1777 at 1794.732 kb on - strand, within EX28DRAFT_1777 at 1794.776 kb on + strand at 1794.838 kb on + strand at 1794.838 kb on + strand at 1794.838 kb on + strand at 1794.839 kb on - strand at 1794.842 kb on + strand at 1794.952 kb on - strand at 1794.957 kb on - strand at 1794.957 kb on - strand at 1794.968 kb on + strand at 1794.968 kb on + strand at 1794.969 kb on - strand at 1794.977 kb on - strand at 1794.977 kb on - strand at 1795.038 kb on + strand at 1795.039 kb on - strand at 1795.447 kb on + strand at 1795.584 kb on - strand at 1795.674 kb on + strand at 1795.685 kb on + strand at 1795.686 kb on - strand at 1795.730 kb on - strand at 1795.742 kb on + strand at 1795.762 kb on - strand at 1795.821 kb on + strand, within EX28DRAFT_1779 at 1795.857 kb on + strand, within EX28DRAFT_1779 at 1795.858 kb on - strand, within EX28DRAFT_1779 at 1795.881 kb on + strand, within EX28DRAFT_1779
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,792,745 + EX28DRAFT_1776 0.59 -0.1 1,792,746 - EX28DRAFT_1776 0.59 -0.5 1,792,763 + EX28DRAFT_1776 0.60 +0.3 1,792,809 - EX28DRAFT_1776 0.62 -0.4 1,792,876 + EX28DRAFT_1776 0.66 +1.1 1,792,943 + EX28DRAFT_1776 0.69 +1.8 1,792,943 + EX28DRAFT_1776 0.69 +0.3 1,793,000 + EX28DRAFT_1776 0.72 -0.9 1,793,084 + EX28DRAFT_1776 0.77 +0.6 1,793,093 + EX28DRAFT_1776 0.77 +0.0 1,793,118 - EX28DRAFT_1776 0.78 +0.5 1,793,127 - EX28DRAFT_1776 0.79 -0.5 1,793,127 - EX28DRAFT_1776 0.79 +0.3 1,793,458 + -0.4 1,793,459 - +0.3 1,793,459 - +0.3 1,793,475 - -2.6 1,793,609 + +0.7 1,793,609 + -0.8 1,793,609 + -0.2 1,793,611 + -0.4 1,793,624 - +1.3 1,793,689 + -0.1 1,793,689 + +0.0 1,793,710 + -0.1 1,793,982 - EX28DRAFT_1777 0.30 -0.7 1,794,055 + EX28DRAFT_1777 0.35 -1.8 1,794,056 - EX28DRAFT_1777 0.35 -1.0 1,794,268 + EX28DRAFT_1777 0.52 -0.3 1,794,327 - EX28DRAFT_1777 0.56 +0.4 1,794,440 + EX28DRAFT_1777 0.65 +0.2 1,794,461 + EX28DRAFT_1777 0.67 -1.5 1,794,461 + EX28DRAFT_1777 0.67 -0.6 1,794,462 - EX28DRAFT_1777 0.67 -0.3 1,794,463 + EX28DRAFT_1777 0.67 +0.6 1,794,477 + EX28DRAFT_1777 0.68 +0.2 1,794,478 - EX28DRAFT_1777 0.68 -0.4 1,794,482 + EX28DRAFT_1777 0.68 +0.1 1,794,483 - EX28DRAFT_1777 0.68 +0.2 1,794,483 - EX28DRAFT_1777 0.68 -0.5 1,794,483 - EX28DRAFT_1777 0.68 -0.3 1,794,497 - EX28DRAFT_1777 0.69 -1.3 1,794,561 + EX28DRAFT_1777 0.74 +0.0 1,794,562 - EX28DRAFT_1777 0.74 -1.0 1,794,625 + EX28DRAFT_1777 0.79 -0.2 1,794,626 - EX28DRAFT_1777 0.79 -0.9 1,794,629 + EX28DRAFT_1777 0.79 -0.5 1,794,725 + EX28DRAFT_1777 0.87 -1.4 1,794,725 + EX28DRAFT_1777 0.87 -0.2 1,794,726 - EX28DRAFT_1777 0.87 -1.0 1,794,726 - EX28DRAFT_1777 0.87 -0.4 1,794,726 - EX28DRAFT_1777 0.87 -0.9 1,794,726 - EX28DRAFT_1777 0.87 -0.8 1,794,731 + EX28DRAFT_1777 0.87 -0.2 1,794,731 + EX28DRAFT_1777 0.87 -0.6 1,794,732 - EX28DRAFT_1777 0.87 +0.1 1,794,776 + -0.4 1,794,838 + -0.9 1,794,838 + +0.4 1,794,838 + +0.2 1,794,839 - -0.7 1,794,842 + -0.9 1,794,952 - +0.6 1,794,957 - +1.0 1,794,957 - +1.8 1,794,968 + -0.4 1,794,968 + -1.3 1,794,969 - -1.0 1,794,977 - +0.3 1,794,977 - -0.3 1,795,038 + +0.4 1,795,039 - -0.2 1,795,447 + +0.5 1,795,584 - -0.3 1,795,674 + +0.3 1,795,685 + +1.8 1,795,686 - -0.0 1,795,730 - +0.4 1,795,742 + +0.3 1,795,762 - -0.2 1,795,821 + EX28DRAFT_1779 0.13 +0.1 1,795,857 + EX28DRAFT_1779 0.21 +0.1 1,795,858 - EX28DRAFT_1779 0.21 +0.6 1,795,881 + EX28DRAFT_1779 0.27 -0.7
Or see this region's nucleotide sequence