Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1752 and EX28DRAFT_1753 are separated by 433 nucleotides EX28DRAFT_1753 and EX28DRAFT_1754 are separated by 6 nucleotides EX28DRAFT_1754 and EX28DRAFT_1755 are separated by 6 nucleotides
EX28DRAFT_1752: EX28DRAFT_1752 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 1,767,074 to 1,768,294
_1752
EX28DRAFT_1753: EX28DRAFT_1753 - exodeoxyribonuclease III, at 1,768,728 to 1,769,534
_1753
EX28DRAFT_1754: EX28DRAFT_1754 - Uncharacterized conserved protein, at 1,769,541 to 1,770,224
_1754
EX28DRAFT_1755: EX28DRAFT_1755 - ABC-type uncharacterized transport system, periplasmic component, at 1,770,231 to 1,771,400
_1755
Position (kb)
1768
1769
1770 Strain fitness (log2 ratio)
-1
0
1
2 at 1767.786 kb on + strand, within EX28DRAFT_1752 at 1767.835 kb on - strand, within EX28DRAFT_1752 at 1767.989 kb on - strand, within EX28DRAFT_1752 at 1768.173 kb on + strand at 1768.174 kb on - strand at 1768.174 kb on - strand at 1768.243 kb on - strand at 1768.280 kb on - strand at 1768.294 kb on + strand at 1768.295 kb on - strand at 1768.362 kb on + strand at 1768.402 kb on - strand at 1768.536 kb on + strand at 1768.621 kb on + strand at 1768.639 kb on - strand at 1768.651 kb on + strand at 1768.745 kb on + strand at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.894 kb on - strand, within EX28DRAFT_1753 at 1768.894 kb on - strand, within EX28DRAFT_1753 at 1769.053 kb on - strand, within EX28DRAFT_1753 at 1769.131 kb on - strand, within EX28DRAFT_1753 at 1769.186 kb on + strand, within EX28DRAFT_1753 at 1769.319 kb on - strand, within EX28DRAFT_1753 at 1769.533 kb on - strand at 1769.533 kb on - strand at 1769.564 kb on - strand at 1769.588 kb on + strand at 1769.588 kb on + strand at 1769.639 kb on + strand, within EX28DRAFT_1754 at 1769.640 kb on - strand, within EX28DRAFT_1754 at 1769.668 kb on - strand, within EX28DRAFT_1754 at 1769.715 kb on + strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1770.022 kb on + strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.024 kb on + strand, within EX28DRAFT_1754 at 1770.143 kb on - strand, within EX28DRAFT_1754 at 1770.152 kb on + strand, within EX28DRAFT_1754 at 1770.158 kb on - strand at 1770.158 kb on - strand at 1770.215 kb on + strand at 1770.230 kb on + strand at 1770.500 kb on + strand, within EX28DRAFT_1755
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,767,786 + EX28DRAFT_1752 0.58 +1.1 1,767,835 - EX28DRAFT_1752 0.62 +0.1 1,767,989 - EX28DRAFT_1752 0.75 +0.5 1,768,173 + -0.8 1,768,174 - -1.2 1,768,174 - +0.1 1,768,243 - +0.4 1,768,280 - -0.4 1,768,294 + +0.2 1,768,295 - +0.4 1,768,362 + -0.3 1,768,402 - -0.2 1,768,536 + -1.4 1,768,621 + +1.3 1,768,639 - -0.2 1,768,651 + +0.2 1,768,745 + -0.0 1,768,847 + EX28DRAFT_1753 0.15 -1.1 1,768,847 + EX28DRAFT_1753 0.15 -0.3 1,768,847 + EX28DRAFT_1753 0.15 +0.3 1,768,847 + EX28DRAFT_1753 0.15 +0.7 1,768,848 - EX28DRAFT_1753 0.15 -0.2 1,768,848 - EX28DRAFT_1753 0.15 +0.5 1,768,848 - EX28DRAFT_1753 0.15 +0.3 1,768,848 - EX28DRAFT_1753 0.15 +0.1 1,768,893 + EX28DRAFT_1753 0.20 +0.3 1,768,893 + EX28DRAFT_1753 0.20 +0.7 1,768,893 + EX28DRAFT_1753 0.20 -0.2 1,768,894 - EX28DRAFT_1753 0.21 +0.2 1,768,894 - EX28DRAFT_1753 0.21 +0.1 1,769,053 - EX28DRAFT_1753 0.40 -0.1 1,769,131 - EX28DRAFT_1753 0.50 +1.2 1,769,186 + EX28DRAFT_1753 0.57 +0.5 1,769,319 - EX28DRAFT_1753 0.73 -0.5 1,769,533 - +0.1 1,769,533 - -0.4 1,769,564 - -1.0 1,769,588 + +1.8 1,769,588 + +1.7 1,769,639 + EX28DRAFT_1754 0.14 -0.2 1,769,640 - EX28DRAFT_1754 0.14 +0.4 1,769,668 - EX28DRAFT_1754 0.19 +0.2 1,769,715 + EX28DRAFT_1754 0.25 -0.1 1,769,716 - EX28DRAFT_1754 0.26 -0.1 1,769,716 - EX28DRAFT_1754 0.26 -0.1 1,769,716 - EX28DRAFT_1754 0.26 +0.3 1,770,022 + EX28DRAFT_1754 0.70 +0.2 1,770,023 - EX28DRAFT_1754 0.70 -0.6 1,770,023 - EX28DRAFT_1754 0.70 +0.2 1,770,023 - EX28DRAFT_1754 0.70 +0.0 1,770,024 + EX28DRAFT_1754 0.71 +0.1 1,770,143 - EX28DRAFT_1754 0.88 -0.5 1,770,152 + EX28DRAFT_1754 0.89 +1.0 1,770,158 - +0.2 1,770,158 - -0.0 1,770,215 + +1.4 1,770,230 + -0.0 1,770,500 + EX28DRAFT_1755 0.23 +0.1
Or see this region's nucleotide sequence