Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1711 and EX28DRAFT_1712 are separated by 10 nucleotides EX28DRAFT_1712 and EX28DRAFT_1713 are separated by 40 nucleotides EX28DRAFT_1713 and EX28DRAFT_1714 are separated by 61 nucleotides
EX28DRAFT_1711: EX28DRAFT_1711 - H+/gluconate symporter and related permeases, at 1,727,251 to 1,728,642
_1711
EX28DRAFT_1712: EX28DRAFT_1712 - 3-hydroxybutyrate dehydrogenase, at 1,728,653 to 1,729,423
_1712
EX28DRAFT_1713: EX28DRAFT_1713 - Uncharacterized conserved protein, at 1,729,464 to 1,730,906
_1713
EX28DRAFT_1714: EX28DRAFT_1714 - FOG: EAL domain, at 1,730,968 to 1,731,684
_1714
Position (kb)
1729
1730
1731 Strain fitness (log2 ratio)
-1
0
1
2 at 1728.489 kb on + strand, within EX28DRAFT_1711 at 1728.585 kb on + strand at 1728.724 kb on - strand at 1728.921 kb on + strand, within EX28DRAFT_1712 at 1729.128 kb on + strand, within EX28DRAFT_1712 at 1729.129 kb on - strand, within EX28DRAFT_1712 at 1729.519 kb on + strand at 1729.519 kb on + strand at 1729.520 kb on - strand at 1729.572 kb on + strand at 1729.582 kb on + strand at 1729.715 kb on - strand, within EX28DRAFT_1713 at 1729.781 kb on + strand, within EX28DRAFT_1713 at 1729.782 kb on - strand, within EX28DRAFT_1713 at 1729.782 kb on - strand, within EX28DRAFT_1713 at 1729.820 kb on + strand, within EX28DRAFT_1713 at 1729.821 kb on - strand, within EX28DRAFT_1713 at 1729.928 kb on - strand, within EX28DRAFT_1713 at 1729.941 kb on + strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.942 kb on - strand, within EX28DRAFT_1713 at 1729.951 kb on + strand, within EX28DRAFT_1713 at 1729.951 kb on + strand, within EX28DRAFT_1713 at 1729.980 kb on + strand, within EX28DRAFT_1713 at 1729.980 kb on + strand, within EX28DRAFT_1713 at 1729.980 kb on + strand, within EX28DRAFT_1713 at 1729.981 kb on - strand, within EX28DRAFT_1713 at 1729.981 kb on - strand, within EX28DRAFT_1713 at 1729.981 kb on - strand, within EX28DRAFT_1713 at 1730.059 kb on + strand, within EX28DRAFT_1713 at 1730.090 kb on + strand, within EX28DRAFT_1713 at 1730.090 kb on + strand, within EX28DRAFT_1713 at 1730.090 kb on + strand, within EX28DRAFT_1713 at 1730.092 kb on + strand, within EX28DRAFT_1713 at 1730.093 kb on - strand, within EX28DRAFT_1713 at 1730.093 kb on - strand, within EX28DRAFT_1713 at 1730.257 kb on + strand, within EX28DRAFT_1713 at 1730.257 kb on + strand, within EX28DRAFT_1713 at 1730.257 kb on + strand, within EX28DRAFT_1713 at 1730.261 kb on + strand, within EX28DRAFT_1713 at 1730.390 kb on + strand, within EX28DRAFT_1713 at 1730.390 kb on + strand, within EX28DRAFT_1713 at 1730.390 kb on + strand, within EX28DRAFT_1713 at 1730.690 kb on - strand, within EX28DRAFT_1713 at 1730.690 kb on - strand, within EX28DRAFT_1713 at 1730.817 kb on - strand at 1730.832 kb on + strand at 1730.833 kb on - strand at 1730.833 kb on - strand at 1730.891 kb on + strand at 1730.891 kb on + strand at 1730.891 kb on + strand at 1730.906 kb on + strand at 1730.906 kb on + strand at 1730.922 kb on + strand at 1730.922 kb on + strand at 1730.927 kb on + strand at 1730.927 kb on + strand at 1730.991 kb on + strand at 1730.992 kb on - strand at 1730.992 kb on - strand at 1731.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,728,489 + EX28DRAFT_1711 0.89 -0.2 1,728,585 + -0.4 1,728,724 - +0.6 1,728,921 + EX28DRAFT_1712 0.35 +0.1 1,729,128 + EX28DRAFT_1712 0.62 +0.5 1,729,129 - EX28DRAFT_1712 0.62 +0.4 1,729,519 + +0.0 1,729,519 + -0.6 1,729,520 - -0.3 1,729,572 + +0.5 1,729,582 + -0.7 1,729,715 - EX28DRAFT_1713 0.17 -0.2 1,729,781 + EX28DRAFT_1713 0.22 +0.3 1,729,782 - EX28DRAFT_1713 0.22 +0.2 1,729,782 - EX28DRAFT_1713 0.22 -0.4 1,729,820 + EX28DRAFT_1713 0.25 +0.6 1,729,821 - EX28DRAFT_1713 0.25 -0.2 1,729,928 - EX28DRAFT_1713 0.32 -0.4 1,729,941 + EX28DRAFT_1713 0.33 +0.1 1,729,942 - EX28DRAFT_1713 0.33 +0.2 1,729,942 - EX28DRAFT_1713 0.33 +0.7 1,729,942 - EX28DRAFT_1713 0.33 +2.6 1,729,942 - EX28DRAFT_1713 0.33 +0.1 1,729,942 - EX28DRAFT_1713 0.33 +1.2 1,729,951 + EX28DRAFT_1713 0.34 +0.5 1,729,951 + EX28DRAFT_1713 0.34 -0.6 1,729,980 + EX28DRAFT_1713 0.36 -0.2 1,729,980 + EX28DRAFT_1713 0.36 +0.2 1,729,980 + EX28DRAFT_1713 0.36 +0.3 1,729,981 - EX28DRAFT_1713 0.36 +0.3 1,729,981 - EX28DRAFT_1713 0.36 -0.5 1,729,981 - EX28DRAFT_1713 0.36 +0.4 1,730,059 + EX28DRAFT_1713 0.41 -0.8 1,730,090 + EX28DRAFT_1713 0.43 +0.4 1,730,090 + EX28DRAFT_1713 0.43 +0.8 1,730,090 + EX28DRAFT_1713 0.43 -0.1 1,730,092 + EX28DRAFT_1713 0.44 -0.2 1,730,093 - EX28DRAFT_1713 0.44 -0.1 1,730,093 - EX28DRAFT_1713 0.44 +0.8 1,730,257 + EX28DRAFT_1713 0.55 -0.3 1,730,257 + EX28DRAFT_1713 0.55 +0.3 1,730,257 + EX28DRAFT_1713 0.55 -0.2 1,730,261 + EX28DRAFT_1713 0.55 +0.0 1,730,390 + EX28DRAFT_1713 0.64 +0.5 1,730,390 + EX28DRAFT_1713 0.64 -0.0 1,730,390 + EX28DRAFT_1713 0.64 +0.3 1,730,690 - EX28DRAFT_1713 0.85 -0.6 1,730,690 - EX28DRAFT_1713 0.85 +1.0 1,730,817 - +0.1 1,730,832 + +0.4 1,730,833 - -0.4 1,730,833 - -0.0 1,730,891 + +0.3 1,730,891 + +0.3 1,730,891 + +0.8 1,730,906 + -0.0 1,730,906 + +0.1 1,730,922 + +0.1 1,730,922 + +0.7 1,730,927 + -1.1 1,730,927 + +0.1 1,730,991 + +0.1 1,730,992 - -0.1 1,730,992 - -0.1 1,731,840 + +0.2
Or see this region's nucleotide sequence