Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1703 and EX28DRAFT_1704 are separated by 233 nucleotides EX28DRAFT_1704 and EX28DRAFT_1705 are separated by 335 nucleotides
EX28DRAFT_1703: EX28DRAFT_1703 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 1,717,206 to 1,718,606
_1703
EX28DRAFT_1704: EX28DRAFT_1704 - phosphoenolpyruvate synthase (EC 2.7.9.2), at 1,718,840 to 1,721,218
_1704
EX28DRAFT_1705: EX28DRAFT_1705 - Uncharacterized protein conserved in bacteria, at 1,721,554 to 1,722,387
_1705
Position (kb)
1718
1719
1720
1721
1722 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1717.840 kb on + strand, within EX28DRAFT_1703 at 1717.840 kb on + strand, within EX28DRAFT_1703 at 1717.844 kb on - strand, within EX28DRAFT_1703 at 1717.890 kb on - strand, within EX28DRAFT_1703 at 1717.893 kb on - strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.964 kb on + strand, within EX28DRAFT_1703 at 1717.964 kb on + strand, within EX28DRAFT_1703 at 1717.965 kb on - strand, within EX28DRAFT_1703 at 1717.965 kb on - strand, within EX28DRAFT_1703 at 1718.053 kb on + strand, within EX28DRAFT_1703 at 1718.086 kb on - strand, within EX28DRAFT_1703 at 1718.216 kb on - strand, within EX28DRAFT_1703 at 1718.257 kb on + strand, within EX28DRAFT_1703 at 1718.263 kb on - strand, within EX28DRAFT_1703 at 1718.308 kb on + strand, within EX28DRAFT_1703 at 1718.308 kb on + strand, within EX28DRAFT_1703 at 1718.309 kb on - strand, within EX28DRAFT_1703 at 1718.309 kb on - strand, within EX28DRAFT_1703 at 1718.309 kb on - strand, within EX28DRAFT_1703 at 1718.316 kb on - strand, within EX28DRAFT_1703 at 1718.498 kb on - strand at 1718.569 kb on - strand at 1718.574 kb on - strand at 1718.589 kb on + strand at 1718.610 kb on + strand at 1718.610 kb on + strand at 1718.611 kb on - strand at 1718.692 kb on + strand at 1718.722 kb on - strand at 1718.841 kb on + strand at 1718.842 kb on - strand at 1718.842 kb on - strand at 1718.924 kb on - strand at 1718.924 kb on - strand at 1718.979 kb on + strand at 1718.980 kb on - strand at 1718.980 kb on - strand at 1719.190 kb on + strand, within EX28DRAFT_1704 at 1719.190 kb on + strand, within EX28DRAFT_1704 at 1719.460 kb on - strand, within EX28DRAFT_1704 at 1719.556 kb on - strand, within EX28DRAFT_1704 at 1719.556 kb on - strand, within EX28DRAFT_1704 at 1719.832 kb on - strand, within EX28DRAFT_1704 at 1719.838 kb on - strand, within EX28DRAFT_1704 at 1719.838 kb on - strand, within EX28DRAFT_1704 at 1720.168 kb on + strand, within EX28DRAFT_1704 at 1720.168 kb on + strand, within EX28DRAFT_1704 at 1720.168 kb on + strand, within EX28DRAFT_1704 at 1720.169 kb on - strand, within EX28DRAFT_1704 at 1720.169 kb on - strand, within EX28DRAFT_1704 at 1720.169 kb on - strand, within EX28DRAFT_1704 at 1720.169 kb on - strand, within EX28DRAFT_1704 at 1720.170 kb on + strand, within EX28DRAFT_1704 at 1720.170 kb on + strand, within EX28DRAFT_1704 at 1720.367 kb on + strand, within EX28DRAFT_1704 at 1720.368 kb on - strand, within EX28DRAFT_1704 at 1720.368 kb on - strand, within EX28DRAFT_1704 at 1720.368 kb on - strand, within EX28DRAFT_1704 at 1720.480 kb on + strand, within EX28DRAFT_1704 at 1720.559 kb on - strand, within EX28DRAFT_1704 at 1720.816 kb on + strand, within EX28DRAFT_1704 at 1720.987 kb on + strand at 1721.010 kb on + strand at 1721.157 kb on - strand at 1721.182 kb on - strand at 1721.267 kb on - strand at 1721.267 kb on - strand at 1721.270 kb on + strand at 1721.270 kb on + strand at 1721.270 kb on + strand at 1721.271 kb on - strand at 1721.275 kb on - strand at 1721.285 kb on - strand at 1721.288 kb on + strand at 1721.289 kb on - strand at 1721.528 kb on + strand at 1721.584 kb on + strand at 1721.732 kb on - strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.764 kb on + strand, within EX28DRAFT_1705 at 1721.765 kb on - strand, within EX28DRAFT_1705 at 1721.765 kb on - strand, within EX28DRAFT_1705 at 1721.769 kb on + strand, within EX28DRAFT_1705 at 1721.770 kb on - strand, within EX28DRAFT_1705 at 1721.925 kb on + strand, within EX28DRAFT_1705 at 1721.925 kb on + strand, within EX28DRAFT_1705 at 1721.957 kb on - strand, within EX28DRAFT_1705 at 1722.058 kb on + strand, within EX28DRAFT_1705
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,717,840 + EX28DRAFT_1703 0.45 +0.2 1,717,840 + EX28DRAFT_1703 0.45 -0.2 1,717,844 - EX28DRAFT_1703 0.46 -0.1 1,717,890 - EX28DRAFT_1703 0.49 +1.1 1,717,893 - EX28DRAFT_1703 0.49 +0.2 1,717,907 + EX28DRAFT_1703 0.50 +0.5 1,717,907 + EX28DRAFT_1703 0.50 -0.9 1,717,907 + EX28DRAFT_1703 0.50 +0.5 1,717,964 + EX28DRAFT_1703 0.54 -1.3 1,717,964 + EX28DRAFT_1703 0.54 -0.9 1,717,965 - EX28DRAFT_1703 0.54 +1.5 1,717,965 - EX28DRAFT_1703 0.54 +0.1 1,718,053 + EX28DRAFT_1703 0.60 +0.1 1,718,086 - EX28DRAFT_1703 0.63 +0.3 1,718,216 - EX28DRAFT_1703 0.72 -1.0 1,718,257 + EX28DRAFT_1703 0.75 +0.0 1,718,263 - EX28DRAFT_1703 0.75 -0.4 1,718,308 + EX28DRAFT_1703 0.79 -0.0 1,718,308 + EX28DRAFT_1703 0.79 +0.5 1,718,309 - EX28DRAFT_1703 0.79 -0.0 1,718,309 - EX28DRAFT_1703 0.79 +0.4 1,718,309 - EX28DRAFT_1703 0.79 +0.1 1,718,316 - EX28DRAFT_1703 0.79 +1.7 1,718,498 - +0.5 1,718,569 - +0.3 1,718,574 - +0.3 1,718,589 + +0.1 1,718,610 + -0.0 1,718,610 + +0.3 1,718,611 - -0.4 1,718,692 + +0.4 1,718,722 - +0.3 1,718,841 + +0.1 1,718,842 - +0.2 1,718,842 - -0.0 1,718,924 - +0.5 1,718,924 - +0.2 1,718,979 + -0.8 1,718,980 - -0.3 1,718,980 - +0.2 1,719,190 + EX28DRAFT_1704 0.15 -0.5 1,719,190 + EX28DRAFT_1704 0.15 -1.1 1,719,460 - EX28DRAFT_1704 0.26 +0.3 1,719,556 - EX28DRAFT_1704 0.30 -1.2 1,719,556 - EX28DRAFT_1704 0.30 -0.3 1,719,832 - EX28DRAFT_1704 0.42 +0.5 1,719,838 - EX28DRAFT_1704 0.42 +0.1 1,719,838 - EX28DRAFT_1704 0.42 +0.4 1,720,168 + EX28DRAFT_1704 0.56 -0.5 1,720,168 + EX28DRAFT_1704 0.56 +2.2 1,720,168 + EX28DRAFT_1704 0.56 -0.6 1,720,169 - EX28DRAFT_1704 0.56 +0.7 1,720,169 - EX28DRAFT_1704 0.56 -0.0 1,720,169 - EX28DRAFT_1704 0.56 -0.1 1,720,169 - EX28DRAFT_1704 0.56 +0.8 1,720,170 + EX28DRAFT_1704 0.56 +0.1 1,720,170 + EX28DRAFT_1704 0.56 +1.3 1,720,367 + EX28DRAFT_1704 0.64 +0.4 1,720,368 - EX28DRAFT_1704 0.64 +0.4 1,720,368 - EX28DRAFT_1704 0.64 +0.4 1,720,368 - EX28DRAFT_1704 0.64 +0.5 1,720,480 + EX28DRAFT_1704 0.69 -0.7 1,720,559 - EX28DRAFT_1704 0.72 +0.2 1,720,816 + EX28DRAFT_1704 0.83 +0.4 1,720,987 + +0.8 1,721,010 + +0.2 1,721,157 - -0.2 1,721,182 - -0.3 1,721,267 - +0.1 1,721,267 - +0.4 1,721,270 + +0.1 1,721,270 + -0.3 1,721,270 + +0.0 1,721,271 - +0.7 1,721,275 - -1.2 1,721,285 - -0.1 1,721,288 + +0.6 1,721,289 - +0.1 1,721,528 + +0.8 1,721,584 + +0.7 1,721,732 - EX28DRAFT_1705 0.21 -0.0 1,721,764 + EX28DRAFT_1705 0.25 +0.4 1,721,764 + EX28DRAFT_1705 0.25 +0.4 1,721,764 + EX28DRAFT_1705 0.25 +0.2 1,721,764 + EX28DRAFT_1705 0.25 -0.2 1,721,764 + EX28DRAFT_1705 0.25 +0.8 1,721,764 + EX28DRAFT_1705 0.25 +0.2 1,721,765 - EX28DRAFT_1705 0.25 +0.5 1,721,765 - EX28DRAFT_1705 0.25 -0.1 1,721,769 + EX28DRAFT_1705 0.26 +0.3 1,721,770 - EX28DRAFT_1705 0.26 -2.3 1,721,925 + EX28DRAFT_1705 0.44 -0.2 1,721,925 + EX28DRAFT_1705 0.44 +0.1 1,721,957 - EX28DRAFT_1705 0.48 -1.3 1,722,058 + EX28DRAFT_1705 0.60 -0.7
Or see this region's nucleotide sequence