Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1642

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1640 and EX28DRAFT_1641 overlap by 34 nucleotidesEX28DRAFT_1641 and EX28DRAFT_1642 overlap by 1 nucleotidesEX28DRAFT_1642 and EX28DRAFT_1643 overlap by 22 nucleotidesEX28DRAFT_1643 and EX28DRAFT_1644 are separated by 80 nucleotides EX28DRAFT_1640: EX28DRAFT_1640 - Protein of unknown function (DUF1656), at 1,657,445 to 1,657,681 _1640 EX28DRAFT_1641: EX28DRAFT_1641 - RND family efflux transporter, MFP subunit, at 1,657,648 to 1,658,544 _1641 EX28DRAFT_1642: EX28DRAFT_1642 - Predicted membrane protein, at 1,658,544 to 1,660,577 _1642 EX28DRAFT_1643: EX28DRAFT_1643 - Cu/Zn superoxide dismutase, at 1,660,556 to 1,661,074 _1643 EX28DRAFT_1644: EX28DRAFT_1644 - Predicted oxidoreductase, at 1,661,155 to 1,662,051 _1644 Position (kb) 1658 1659 1660 1661Strain fitness (log2 ratio) -3 -2 -1 0 1at 1657.589 kb on + strand, within EX28DRAFT_1640at 1657.590 kb on - strand, within EX28DRAFT_1640at 1657.590 kb on - strand, within EX28DRAFT_1640at 1657.770 kb on + strand, within EX28DRAFT_1641at 1657.770 kb on + strand, within EX28DRAFT_1641at 1658.026 kb on + strand, within EX28DRAFT_1641at 1658.027 kb on - strand, within EX28DRAFT_1641at 1658.045 kb on + strand, within EX28DRAFT_1641at 1658.197 kb on + strand, within EX28DRAFT_1641at 1658.197 kb on + strand, within EX28DRAFT_1641at 1658.197 kb on + strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.248 kb on + strand, within EX28DRAFT_1641at 1658.320 kb on + strand, within EX28DRAFT_1641at 1658.320 kb on + strand, within EX28DRAFT_1641at 1658.321 kb on - strand, within EX28DRAFT_1641at 1658.417 kb on + strand, within EX28DRAFT_1641at 1658.658 kb on + strandat 1658.659 kb on - strandat 1658.682 kb on + strandat 1658.742 kb on - strandat 1658.791 kb on + strand, within EX28DRAFT_1642at 1658.796 kb on - strand, within EX28DRAFT_1642at 1658.886 kb on - strand, within EX28DRAFT_1642at 1659.266 kb on + strand, within EX28DRAFT_1642at 1659.266 kb on + strand, within EX28DRAFT_1642at 1659.270 kb on + strand, within EX28DRAFT_1642at 1659.270 kb on + strand, within EX28DRAFT_1642at 1659.270 kb on + strand, within EX28DRAFT_1642at 1659.270 kb on + strand, within EX28DRAFT_1642at 1659.414 kb on + strand, within EX28DRAFT_1642at 1659.415 kb on - strand, within EX28DRAFT_1642at 1659.460 kb on - strand, within EX28DRAFT_1642at 1659.460 kb on - strand, within EX28DRAFT_1642at 1659.513 kb on + strand, within EX28DRAFT_1642at 1659.513 kb on + strand, within EX28DRAFT_1642at 1659.514 kb on - strand, within EX28DRAFT_1642at 1659.537 kb on - strand, within EX28DRAFT_1642at 1659.680 kb on + strand, within EX28DRAFT_1642at 1659.741 kb on + strand, within EX28DRAFT_1642at 1659.741 kb on + strand, within EX28DRAFT_1642at 1659.773 kb on + strand, within EX28DRAFT_1642at 1659.841 kb on + strand, within EX28DRAFT_1642at 1659.842 kb on - strand, within EX28DRAFT_1642at 1659.847 kb on + strand, within EX28DRAFT_1642at 1659.848 kb on - strand, within EX28DRAFT_1642at 1659.848 kb on - strand, within EX28DRAFT_1642at 1659.972 kb on - strand, within EX28DRAFT_1642at 1660.075 kb on + strand, within EX28DRAFT_1642at 1660.075 kb on + strand, within EX28DRAFT_1642at 1660.123 kb on + strand, within EX28DRAFT_1642at 1660.123 kb on + strand, within EX28DRAFT_1642at 1660.123 kb on + strand, within EX28DRAFT_1642at 1660.194 kb on + strand, within EX28DRAFT_1642at 1660.195 kb on - strand, within EX28DRAFT_1642at 1660.372 kb on + strand, within EX28DRAFT_1642at 1660.480 kb on + strandat 1660.481 kb on - strandat 1660.487 kb on + strandat 1660.487 kb on + strandat 1660.488 kb on - strandat 1660.490 kb on - strandat 1660.490 kb on - strandat 1660.490 kb on - strandat 1660.618 kb on + strand, within EX28DRAFT_1643at 1660.619 kb on - strand, within EX28DRAFT_1643at 1661.074 kb on + strandat 1661.075 kb on - strandat 1661.104 kb on + strandat 1661.110 kb on + strandat 1661.312 kb on + strand, within EX28DRAFT_1644at 1661.312 kb on + strand, within EX28DRAFT_1644

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,657,589 + EX28DRAFT_1640 0.61 +1.6
1,657,590 - EX28DRAFT_1640 0.61 +0.6
1,657,590 - EX28DRAFT_1640 0.61 +0.3
1,657,770 + EX28DRAFT_1641 0.14 -0.3
1,657,770 + EX28DRAFT_1641 0.14 -0.3
1,658,026 + EX28DRAFT_1641 0.42 -0.3
1,658,027 - EX28DRAFT_1641 0.42 +1.3
1,658,045 + EX28DRAFT_1641 0.44 +0.0
1,658,197 + EX28DRAFT_1641 0.61 +0.5
1,658,197 + EX28DRAFT_1641 0.61 +1.3
1,658,197 + EX28DRAFT_1641 0.61 -0.8
1,658,198 - EX28DRAFT_1641 0.61 -0.6
1,658,198 - EX28DRAFT_1641 0.61 +0.6
1,658,198 - EX28DRAFT_1641 0.61 -3.3
1,658,198 - EX28DRAFT_1641 0.61 +1.2
1,658,248 + EX28DRAFT_1641 0.67 -0.5
1,658,320 + EX28DRAFT_1641 0.75 -0.0
1,658,320 + EX28DRAFT_1641 0.75 +0.4
1,658,321 - EX28DRAFT_1641 0.75 -0.6
1,658,417 + EX28DRAFT_1641 0.86 -0.5
1,658,658 + -0.7
1,658,659 - -1.3
1,658,682 + -0.1
1,658,742 - -1.0
1,658,791 + EX28DRAFT_1642 0.12 +0.1
1,658,796 - EX28DRAFT_1642 0.12 -0.2
1,658,886 - EX28DRAFT_1642 0.17 +1.0
1,659,266 + EX28DRAFT_1642 0.35 +0.1
1,659,266 + EX28DRAFT_1642 0.35 -0.4
1,659,270 + EX28DRAFT_1642 0.36 +0.1
1,659,270 + EX28DRAFT_1642 0.36 -0.4
1,659,270 + EX28DRAFT_1642 0.36 -0.8
1,659,270 + EX28DRAFT_1642 0.36 -0.2
1,659,414 + EX28DRAFT_1642 0.43 +0.0
1,659,415 - EX28DRAFT_1642 0.43 +0.3
1,659,460 - EX28DRAFT_1642 0.45 -0.2
1,659,460 - EX28DRAFT_1642 0.45 -0.3
1,659,513 + EX28DRAFT_1642 0.48 +0.1
1,659,513 + EX28DRAFT_1642 0.48 -0.2
1,659,514 - EX28DRAFT_1642 0.48 +0.9
1,659,537 - EX28DRAFT_1642 0.49 -0.0
1,659,680 + EX28DRAFT_1642 0.56 +1.2
1,659,741 + EX28DRAFT_1642 0.59 +0.4
1,659,741 + EX28DRAFT_1642 0.59 -0.2
1,659,773 + EX28DRAFT_1642 0.60 +0.2
1,659,841 + EX28DRAFT_1642 0.64 +0.2
1,659,842 - EX28DRAFT_1642 0.64 +0.0
1,659,847 + EX28DRAFT_1642 0.64 +0.6
1,659,848 - EX28DRAFT_1642 0.64 +1.5
1,659,848 - EX28DRAFT_1642 0.64 +1.0
1,659,972 - EX28DRAFT_1642 0.70 +0.2
1,660,075 + EX28DRAFT_1642 0.75 +0.1
1,660,075 + EX28DRAFT_1642 0.75 +0.2
1,660,123 + EX28DRAFT_1642 0.78 +0.3
1,660,123 + EX28DRAFT_1642 0.78 -0.5
1,660,123 + EX28DRAFT_1642 0.78 +0.0
1,660,194 + EX28DRAFT_1642 0.81 +0.8
1,660,195 - EX28DRAFT_1642 0.81 +0.2
1,660,372 + EX28DRAFT_1642 0.90 +0.4
1,660,480 + -0.4
1,660,481 - +0.0
1,660,487 + +0.2
1,660,487 + +0.8
1,660,488 - -1.3
1,660,490 - -0.9
1,660,490 - -0.1
1,660,490 - -0.6
1,660,618 + EX28DRAFT_1643 0.12 +1.2
1,660,619 - EX28DRAFT_1643 0.12 -0.3
1,661,074 + +0.1
1,661,075 - +0.3
1,661,104 + +0.0
1,661,110 + +0.4
1,661,312 + EX28DRAFT_1644 0.18 +0.6
1,661,312 + EX28DRAFT_1644 0.18 -0.2

Or see this region's nucleotide sequence