Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1632

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1630 and EX28DRAFT_1631 are separated by 100 nucleotidesEX28DRAFT_1631 and EX28DRAFT_1632 are separated by 60 nucleotidesEX28DRAFT_1632 and EX28DRAFT_1633 are separated by 66 nucleotides EX28DRAFT_1630: EX28DRAFT_1630 - amino acid/peptide transporter (Peptide:H+ symporter), bacterial, at 1,647,641 to 1,649,149 _1630 EX28DRAFT_1631: EX28DRAFT_1631 - Glutathione S-transferase, at 1,649,250 to 1,649,855 _1631 EX28DRAFT_1632: EX28DRAFT_1632 - pyridoxal kinase, at 1,649,916 to 1,650,776 _1632 EX28DRAFT_1633: EX28DRAFT_1633 - tyrosyl-tRNA synthetase (EC 6.1.1.1), at 1,650,843 to 1,652,117 _1633 Position (kb) 1649 1650 1651Strain fitness (log2 ratio) -1 0 1 2at 1649.013 kb on - strandat 1649.095 kb on + strandat 1649.214 kb on + strandat 1649.219 kb on + strandat 1649.220 kb on - strandat 1649.652 kb on + strand, within EX28DRAFT_1631at 1649.652 kb on + strand, within EX28DRAFT_1631at 1649.727 kb on - strand, within EX28DRAFT_1631at 1649.753 kb on + strand, within EX28DRAFT_1631at 1649.781 kb on - strand, within EX28DRAFT_1631at 1649.781 kb on - strand, within EX28DRAFT_1631at 1649.781 kb on - strand, within EX28DRAFT_1631at 1649.790 kb on + strand, within EX28DRAFT_1631at 1649.790 kb on + strand, within EX28DRAFT_1631at 1649.790 kb on + strand, within EX28DRAFT_1631at 1649.791 kb on - strand, within EX28DRAFT_1631at 1649.822 kb on - strandat 1649.917 kb on + strandat 1649.920 kb on - strandat 1649.938 kb on + strandat 1649.988 kb on + strandat 1650.161 kb on + strand, within EX28DRAFT_1632at 1650.162 kb on - strand, within EX28DRAFT_1632at 1650.162 kb on - strand, within EX28DRAFT_1632at 1650.251 kb on + strand, within EX28DRAFT_1632at 1650.454 kb on + strand, within EX28DRAFT_1632at 1650.455 kb on - strand, within EX28DRAFT_1632at 1650.489 kb on + strand, within EX28DRAFT_1632at 1650.490 kb on - strand, within EX28DRAFT_1632at 1650.840 kb on + strandat 1650.840 kb on + strandat 1650.840 kb on + strandat 1650.841 kb on - strandat 1650.844 kb on + strandat 1650.844 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,649,013 - -0.1
1,649,095 + +0.8
1,649,214 + +0.4
1,649,219 + +2.1
1,649,220 - +0.0
1,649,652 + EX28DRAFT_1631 0.66 +0.1
1,649,652 + EX28DRAFT_1631 0.66 +0.2
1,649,727 - EX28DRAFT_1631 0.79 -0.3
1,649,753 + EX28DRAFT_1631 0.83 -0.2
1,649,781 - EX28DRAFT_1631 0.88 -0.4
1,649,781 - EX28DRAFT_1631 0.88 -1.5
1,649,781 - EX28DRAFT_1631 0.88 +0.1
1,649,790 + EX28DRAFT_1631 0.89 +0.2
1,649,790 + EX28DRAFT_1631 0.89 -0.2
1,649,790 + EX28DRAFT_1631 0.89 +0.1
1,649,791 - EX28DRAFT_1631 0.89 +0.1
1,649,822 - +0.7
1,649,917 + -0.7
1,649,920 - -0.3
1,649,938 + -0.7
1,649,988 + -0.1
1,650,161 + EX28DRAFT_1632 0.28 +0.1
1,650,162 - EX28DRAFT_1632 0.29 +0.1
1,650,162 - EX28DRAFT_1632 0.29 -0.3
1,650,251 + EX28DRAFT_1632 0.39 -0.1
1,650,454 + EX28DRAFT_1632 0.62 -1.1
1,650,455 - EX28DRAFT_1632 0.63 +0.3
1,650,489 + EX28DRAFT_1632 0.67 +0.1
1,650,490 - EX28DRAFT_1632 0.67 -1.1
1,650,840 + +0.2
1,650,840 + -0.3
1,650,840 + -0.3
1,650,841 - +0.1
1,650,844 + +0.3
1,650,844 + -0.3

Or see this region's nucleotide sequence