Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1505 and EX28DRAFT_1506 are separated by 174 nucleotides EX28DRAFT_1506 and EX28DRAFT_1507 are separated by 280 nucleotides EX28DRAFT_1507 and EX28DRAFT_1508 are separated by 38 nucleotides EX28DRAFT_1508 and EX28DRAFT_1509 overlap by 14 nucleotides EX28DRAFT_1509 and EX28DRAFT_1510 are separated by 118 nucleotides
EX28DRAFT_1505: EX28DRAFT_1505 - Thioredoxin-like domain, at 1,521,561 to 1,522,097
_1505
EX28DRAFT_1506: EX28DRAFT_1506 - Acid shock protein repeat, at 1,522,272 to 1,522,736
_1506
EX28DRAFT_1507: EX28DRAFT_1507 - V8-like Glu-specific endopeptidase, at 1,523,017 to 1,523,838
_1507
EX28DRAFT_1508: EX28DRAFT_1508 - Membrane transporters of cations and cationic drugs, at 1,523,877 to 1,524,206
_1508
EX28DRAFT_1509: EX28DRAFT_1509 - Membrane transporters of cations and cationic drugs, at 1,524,193 to 1,524,555
_1509
EX28DRAFT_1510: EX28DRAFT_1510 - hypothetical protein, at 1,524,674 to 1,524,844
_1510
Position (kb)
1523
1524 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1522.052 kb on - strand at 1522.052 kb on - strand at 1522.095 kb on + strand at 1522.135 kb on + strand at 1522.136 kb on - strand at 1522.154 kb on + strand at 1522.212 kb on + strand at 1522.212 kb on + strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.213 kb on - strand at 1522.217 kb on - strand at 1522.277 kb on + strand at 1522.278 kb on - strand at 1522.282 kb on + strand at 1522.283 kb on - strand at 1522.285 kb on + strand at 1522.285 kb on + strand at 1522.286 kb on - strand at 1522.534 kb on + strand, within EX28DRAFT_1506 at 1522.535 kb on - strand, within EX28DRAFT_1506 at 1522.592 kb on - strand, within EX28DRAFT_1506 at 1522.648 kb on + strand, within EX28DRAFT_1506 at 1522.648 kb on + strand, within EX28DRAFT_1506 at 1522.649 kb on - strand, within EX28DRAFT_1506 at 1522.671 kb on - strand, within EX28DRAFT_1506 at 1522.734 kb on + strand at 1522.740 kb on + strand at 1522.740 kb on + strand at 1522.741 kb on - strand at 1522.741 kb on - strand at 1522.872 kb on + strand at 1522.873 kb on - strand at 1522.878 kb on - strand at 1522.918 kb on + strand at 1522.959 kb on - strand at 1522.961 kb on - strand at 1522.964 kb on - strand at 1522.987 kb on + strand at 1522.993 kb on + strand at 1522.994 kb on - strand at 1522.997 kb on + strand at 1523.017 kb on - strand at 1523.023 kb on - strand at 1523.118 kb on - strand, within EX28DRAFT_1507 at 1523.188 kb on - strand, within EX28DRAFT_1507 at 1523.220 kb on - strand, within EX28DRAFT_1507 at 1523.220 kb on - strand, within EX28DRAFT_1507 at 1523.469 kb on - strand, within EX28DRAFT_1507 at 1523.469 kb on - strand, within EX28DRAFT_1507 at 1523.504 kb on + strand, within EX28DRAFT_1507 at 1523.603 kb on - strand, within EX28DRAFT_1507 at 1523.605 kb on - strand, within EX28DRAFT_1507 at 1523.605 kb on - strand, within EX28DRAFT_1507 at 1523.619 kb on + strand, within EX28DRAFT_1507 at 1523.668 kb on - strand, within EX28DRAFT_1507 at 1523.889 kb on + strand at 1523.889 kb on + strand at 1523.890 kb on - strand at 1523.944 kb on - strand, within EX28DRAFT_1508 at 1524.025 kb on - strand, within EX28DRAFT_1508 at 1524.539 kb on - strand at 1524.539 kb on - strand at 1524.676 kb on - strand at 1524.677 kb on + strand at 1524.678 kb on - strand at 1524.730 kb on - strand, within EX28DRAFT_1510 at 1524.732 kb on - strand, within EX28DRAFT_1510 at 1524.753 kb on + strand, within EX28DRAFT_1510 at 1524.767 kb on - strand, within EX28DRAFT_1510
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,522,052 - -0.2 1,522,052 - +0.1 1,522,095 + -0.5 1,522,135 + -0.0 1,522,136 - +0.5 1,522,154 + +0.7 1,522,212 + +0.6 1,522,212 + -0.2 1,522,213 - +1.2 1,522,213 - +0.6 1,522,213 - +0.8 1,522,213 - -0.0 1,522,213 - +0.1 1,522,217 - +0.0 1,522,277 + +0.6 1,522,278 - +0.7 1,522,282 + -0.1 1,522,283 - +0.1 1,522,285 + -0.5 1,522,285 + +0.4 1,522,286 - -0.4 1,522,534 + EX28DRAFT_1506 0.56 -0.3 1,522,535 - EX28DRAFT_1506 0.57 +0.7 1,522,592 - EX28DRAFT_1506 0.69 +0.1 1,522,648 + EX28DRAFT_1506 0.81 -0.4 1,522,648 + EX28DRAFT_1506 0.81 +0.7 1,522,649 - EX28DRAFT_1506 0.81 +1.6 1,522,671 - EX28DRAFT_1506 0.86 -1.4 1,522,734 + -1.1 1,522,740 + -0.9 1,522,740 + +0.2 1,522,741 - +0.1 1,522,741 - +0.6 1,522,872 + -2.9 1,522,873 - -0.3 1,522,878 - +2.4 1,522,918 + -0.4 1,522,959 - +0.4 1,522,961 - +1.1 1,522,964 - -0.1 1,522,987 + +0.5 1,522,993 + -0.2 1,522,994 - -0.0 1,522,997 + -0.5 1,523,017 - +0.2 1,523,023 - -0.2 1,523,118 - EX28DRAFT_1507 0.12 +0.2 1,523,188 - EX28DRAFT_1507 0.21 -0.1 1,523,220 - EX28DRAFT_1507 0.25 -2.6 1,523,220 - EX28DRAFT_1507 0.25 -1.4 1,523,469 - EX28DRAFT_1507 0.55 -1.0 1,523,469 - EX28DRAFT_1507 0.55 -0.6 1,523,504 + EX28DRAFT_1507 0.59 -0.0 1,523,603 - EX28DRAFT_1507 0.71 -0.8 1,523,605 - EX28DRAFT_1507 0.72 -0.5 1,523,605 - EX28DRAFT_1507 0.72 -0.7 1,523,619 + EX28DRAFT_1507 0.73 +0.0 1,523,668 - EX28DRAFT_1507 0.79 -0.4 1,523,889 + +1.9 1,523,889 + -0.5 1,523,890 - -0.2 1,523,944 - EX28DRAFT_1508 0.20 +0.0 1,524,025 - EX28DRAFT_1508 0.45 -0.2 1,524,539 - -0.3 1,524,539 - -0.7 1,524,676 - -0.3 1,524,677 + +0.2 1,524,678 - -1.5 1,524,730 - EX28DRAFT_1510 0.33 -0.3 1,524,732 - EX28DRAFT_1510 0.34 +1.4 1,524,753 + EX28DRAFT_1510 0.46 +0.7 1,524,767 - EX28DRAFT_1510 0.54 -0.8
Or see this region's nucleotide sequence