Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1387 and EX28DRAFT_1388 are separated by 112 nucleotides EX28DRAFT_1388 and EX28DRAFT_1389 are separated by 44 nucleotides EX28DRAFT_1389 and EX28DRAFT_1390 are separated by 96 nucleotides
EX28DRAFT_1387: EX28DRAFT_1387 - Transcriptional regulator, at 1,398,221 to 1,399,132
_1387
EX28DRAFT_1388: EX28DRAFT_1388 - Phosphotransferase system cellobiose-specific component IIB, at 1,399,245 to 1,399,559
_1388
EX28DRAFT_1389: EX28DRAFT_1389 - Predicted transcriptional regulators, at 1,399,604 to 1,399,972
_1389
EX28DRAFT_1390: EX28DRAFT_1390 - Short-chain dehydrogenases of various substrate specificities, at 1,400,069 to 1,400,863
_1390
Position (kb)
1399
1400 Strain fitness (log2 ratio)
-2
-1
0
1 at 1398.447 kb on + strand, within EX28DRAFT_1387 at 1398.536 kb on + strand, within EX28DRAFT_1387 at 1398.542 kb on - strand, within EX28DRAFT_1387 at 1398.736 kb on + strand, within EX28DRAFT_1387 at 1399.175 kb on + strand at 1399.176 kb on - strand at 1399.237 kb on + strand at 1399.238 kb on - strand at 1399.280 kb on + strand, within EX28DRAFT_1388 at 1399.438 kb on + strand, within EX28DRAFT_1388 at 1399.458 kb on - strand, within EX28DRAFT_1388 at 1399.458 kb on - strand, within EX28DRAFT_1388 at 1399.517 kb on - strand, within EX28DRAFT_1388 at 1399.564 kb on + strand at 1399.564 kb on + strand at 1399.565 kb on - strand at 1399.636 kb on + strand at 1399.766 kb on + strand, within EX28DRAFT_1389 at 1399.767 kb on - strand, within EX28DRAFT_1389 at 1399.792 kb on + strand, within EX28DRAFT_1389 at 1399.792 kb on + strand, within EX28DRAFT_1389 at 1399.860 kb on + strand, within EX28DRAFT_1389 at 1399.860 kb on + strand, within EX28DRAFT_1389 at 1399.899 kb on - strand, within EX28DRAFT_1389 at 1399.914 kb on + strand, within EX28DRAFT_1389 at 1399.915 kb on - strand, within EX28DRAFT_1389 at 1399.917 kb on + strand, within EX28DRAFT_1389 at 1400.013 kb on - strand at 1400.016 kb on + strand at 1400.016 kb on + strand at 1400.016 kb on + strand at 1400.043 kb on + strand at 1400.043 kb on + strand at 1400.044 kb on - strand at 1400.044 kb on - strand at 1400.084 kb on + strand at 1400.128 kb on - strand at 1400.316 kb on + strand, within EX28DRAFT_1390 at 1400.341 kb on + strand, within EX28DRAFT_1390 at 1400.341 kb on + strand, within EX28DRAFT_1390 at 1400.363 kb on + strand, within EX28DRAFT_1390 at 1400.363 kb on + strand, within EX28DRAFT_1390 at 1400.364 kb on - strand, within EX28DRAFT_1390 at 1400.409 kb on + strand, within EX28DRAFT_1390 at 1400.415 kb on + strand, within EX28DRAFT_1390 at 1400.488 kb on + strand, within EX28DRAFT_1390 at 1400.488 kb on + strand, within EX28DRAFT_1390 at 1400.489 kb on - strand, within EX28DRAFT_1390 at 1400.492 kb on - strand, within EX28DRAFT_1390 at 1400.528 kb on + strand, within EX28DRAFT_1390 at 1400.528 kb on + strand, within EX28DRAFT_1390 at 1400.529 kb on - strand, within EX28DRAFT_1390 at 1400.529 kb on - strand, within EX28DRAFT_1390 at 1400.529 kb on - strand, within EX28DRAFT_1390 at 1400.531 kb on - strand, within EX28DRAFT_1390 at 1400.531 kb on - strand, within EX28DRAFT_1390
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,398,447 + EX28DRAFT_1387 0.25 +0.0 1,398,536 + EX28DRAFT_1387 0.35 -1.2 1,398,542 - EX28DRAFT_1387 0.35 -0.2 1,398,736 + EX28DRAFT_1387 0.56 -0.2 1,399,175 + +0.7 1,399,176 - +0.4 1,399,237 + -0.8 1,399,238 - -0.2 1,399,280 + EX28DRAFT_1388 0.11 -0.4 1,399,438 + EX28DRAFT_1388 0.61 -1.6 1,399,458 - EX28DRAFT_1388 0.68 -0.3 1,399,458 - EX28DRAFT_1388 0.68 -1.1 1,399,517 - EX28DRAFT_1388 0.86 -0.5 1,399,564 + -0.9 1,399,564 + -0.4 1,399,565 - +0.2 1,399,636 + +1.2 1,399,766 + EX28DRAFT_1389 0.44 -0.1 1,399,767 - EX28DRAFT_1389 0.44 -0.2 1,399,792 + EX28DRAFT_1389 0.51 +0.0 1,399,792 + EX28DRAFT_1389 0.51 +0.1 1,399,860 + EX28DRAFT_1389 0.69 +0.2 1,399,860 + EX28DRAFT_1389 0.69 -0.1 1,399,899 - EX28DRAFT_1389 0.80 +0.1 1,399,914 + EX28DRAFT_1389 0.84 +1.0 1,399,915 - EX28DRAFT_1389 0.84 -0.1 1,399,917 + EX28DRAFT_1389 0.85 -0.8 1,400,013 - +0.2 1,400,016 + -1.2 1,400,016 + -0.4 1,400,016 + +0.3 1,400,043 + +0.1 1,400,043 + -1.9 1,400,044 - +0.4 1,400,044 - +0.2 1,400,084 + +1.6 1,400,128 - +0.2 1,400,316 + EX28DRAFT_1390 0.31 +1.1 1,400,341 + EX28DRAFT_1390 0.34 -0.1 1,400,341 + EX28DRAFT_1390 0.34 +0.0 1,400,363 + EX28DRAFT_1390 0.37 -0.0 1,400,363 + EX28DRAFT_1390 0.37 +0.5 1,400,364 - EX28DRAFT_1390 0.37 -0.2 1,400,409 + EX28DRAFT_1390 0.43 -0.0 1,400,415 + EX28DRAFT_1390 0.44 -0.8 1,400,488 + EX28DRAFT_1390 0.53 +0.8 1,400,488 + EX28DRAFT_1390 0.53 +0.6 1,400,489 - EX28DRAFT_1390 0.53 -0.1 1,400,492 - EX28DRAFT_1390 0.53 -0.0 1,400,528 + EX28DRAFT_1390 0.58 -0.9 1,400,528 + EX28DRAFT_1390 0.58 -0.1 1,400,529 - EX28DRAFT_1390 0.58 -0.3 1,400,529 - EX28DRAFT_1390 0.58 -1.0 1,400,529 - EX28DRAFT_1390 0.58 -0.4 1,400,531 - EX28DRAFT_1390 0.58 -0.6 1,400,531 - EX28DRAFT_1390 0.58 -0.2
Or see this region's nucleotide sequence