Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1373 and EX28DRAFT_1374 overlap by 4 nucleotides EX28DRAFT_1374 and EX28DRAFT_1375 overlap by 4 nucleotides EX28DRAFT_1375 and EX28DRAFT_1376 are separated by 256 nucleotides EX28DRAFT_1376 and EX28DRAFT_1377 are separated by 1 nucleotides
EX28DRAFT_1373: EX28DRAFT_1373 - Predicted NAD/FAD-binding protein, at 1,388,602 to 1,389,861
_1373
EX28DRAFT_1374: EX28DRAFT_1374 - Short-chain dehydrogenases of various substrate specificities, at 1,389,858 to 1,390,577
_1374
EX28DRAFT_1375: EX28DRAFT_1375 - SnoaL-like domain, at 1,390,574 to 1,391,008
_1375
EX28DRAFT_1376: EX28DRAFT_1376 - hypothetical protein, at 1,391,265 to 1,391,462
_1376
EX28DRAFT_1377: EX28DRAFT_1377 - hypothetical protein, at 1,391,464 to 1,392,252
_1377
Position (kb)
1390
1391
1392 Strain fitness (log2 ratio)
-2
-1
0
1 at 1389.575 kb on + strand, within EX28DRAFT_1373 at 1389.714 kb on - strand, within EX28DRAFT_1373 at 1390.373 kb on - strand, within EX28DRAFT_1374 at 1390.635 kb on + strand, within EX28DRAFT_1375 at 1390.635 kb on + strand, within EX28DRAFT_1375 at 1390.636 kb on - strand, within EX28DRAFT_1375 at 1390.656 kb on + strand, within EX28DRAFT_1375 at 1390.656 kb on + strand, within EX28DRAFT_1375 at 1390.656 kb on + strand, within EX28DRAFT_1375 at 1390.656 kb on + strand, within EX28DRAFT_1375 at 1390.656 kb on + strand, within EX28DRAFT_1375 at 1390.659 kb on + strand, within EX28DRAFT_1375 at 1390.965 kb on + strand at 1390.966 kb on - strand at 1390.968 kb on + strand at 1390.968 kb on + strand at 1391.206 kb on + strand at 1391.308 kb on + strand, within EX28DRAFT_1376 at 1391.400 kb on + strand, within EX28DRAFT_1376 at 1391.463 kb on + strand at 1391.482 kb on - strand at 1391.482 kb on - strand at 1391.482 kb on - strand at 1391.509 kb on + strand at 1391.510 kb on - strand at 1391.510 kb on - strand at 1391.587 kb on + strand, within EX28DRAFT_1377 at 1391.587 kb on + strand, within EX28DRAFT_1377 at 1391.588 kb on - strand, within EX28DRAFT_1377 at 1391.695 kb on + strand, within EX28DRAFT_1377 at 1391.697 kb on + strand, within EX28DRAFT_1377 at 1391.718 kb on + strand, within EX28DRAFT_1377 at 1391.735 kb on + strand, within EX28DRAFT_1377 at 1391.799 kb on + strand, within EX28DRAFT_1377 at 1391.898 kb on + strand, within EX28DRAFT_1377 at 1391.898 kb on + strand, within EX28DRAFT_1377 at 1391.899 kb on - strand, within EX28DRAFT_1377 at 1391.925 kb on + strand, within EX28DRAFT_1377 at 1391.925 kb on + strand, within EX28DRAFT_1377 at 1391.948 kb on - strand, within EX28DRAFT_1377 at 1391.948 kb on - strand, within EX28DRAFT_1377
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,389,575 + EX28DRAFT_1373 0.77 -0.7 1,389,714 - EX28DRAFT_1373 0.88 -0.1 1,390,373 - EX28DRAFT_1374 0.72 -2.0 1,390,635 + EX28DRAFT_1375 0.14 +0.1 1,390,635 + EX28DRAFT_1375 0.14 +0.3 1,390,636 - EX28DRAFT_1375 0.14 -0.2 1,390,656 + EX28DRAFT_1375 0.19 +0.0 1,390,656 + EX28DRAFT_1375 0.19 +0.4 1,390,656 + EX28DRAFT_1375 0.19 +0.6 1,390,656 + EX28DRAFT_1375 0.19 -0.2 1,390,656 + EX28DRAFT_1375 0.19 +0.3 1,390,659 + EX28DRAFT_1375 0.20 +0.0 1,390,965 + -0.5 1,390,966 - -0.3 1,390,968 + +0.2 1,390,968 + +0.1 1,391,206 + -1.1 1,391,308 + EX28DRAFT_1376 0.22 -0.5 1,391,400 + EX28DRAFT_1376 0.68 +0.1 1,391,463 + +0.1 1,391,482 - -0.1 1,391,482 - -0.1 1,391,482 - +0.3 1,391,509 + +1.0 1,391,510 - +0.6 1,391,510 - +0.4 1,391,587 + EX28DRAFT_1377 0.16 -0.2 1,391,587 + EX28DRAFT_1377 0.16 -0.2 1,391,588 - EX28DRAFT_1377 0.16 -0.8 1,391,695 + EX28DRAFT_1377 0.29 -0.5 1,391,697 + EX28DRAFT_1377 0.30 -0.6 1,391,718 + EX28DRAFT_1377 0.32 -1.4 1,391,735 + EX28DRAFT_1377 0.34 -1.0 1,391,799 + EX28DRAFT_1377 0.42 +1.2 1,391,898 + EX28DRAFT_1377 0.55 +0.6 1,391,898 + EX28DRAFT_1377 0.55 +0.3 1,391,899 - EX28DRAFT_1377 0.55 -0.4 1,391,925 + EX28DRAFT_1377 0.58 -2.6 1,391,925 + EX28DRAFT_1377 0.58 -0.4 1,391,948 - EX28DRAFT_1377 0.61 +0.3 1,391,948 - EX28DRAFT_1377 0.61 -0.3
Or see this region's nucleotide sequence